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Extensive alternative polyadenylation during zebrafish development

Extensive alternative polyadenylation during zebrafish development

http://www.wikidata.org/entity/Q24633200

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Predicting effective microRNA target sites in mammalian mRNAs The organization and regulation of mRNA-protein complexes Tiny giants of gene regulation: experimental strategies for microRNA functional studies Means to an end: mechanisms of alternative polyadenylation of messenger RNA precursors Alternative cleavage and polyadenylation: the long and short of it All's well that ends well: alternative polyadenylation and its implications for stem cell biology Identifying (non-)coding RNAs and small peptides: challenges and opportunities Alternative polyadenylation in the nervous system: to what lengths will 3' UTR extensions take us?PlantAPA: A Portal for Visualization and Analysis of Alternative Polyadenylation in Plants.Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data.A comprehensive analysis of 3' end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadenylation Methods for comprehensive experimental identification of RNA-protein interactions Global analyses of the effect of different cellular contexts on microRNA targeting.3'UTRs take a long shot in the brain.Alternative Polyadenylation Patterns for Novel Gene Discovery and Classification in Cancer The polyadenylation code: a unified model for the regulation of mRNA alternative polyadenylation.Alternative polyadenylation of mRNA precursors.Poly(A)-tail profiling reveals an embryonic switch in translational control.A change-point model for identifying 3'UTR switching by next-generation RNA sequencing Genome-wide determination of poly(A) sites in Medicago truncatula: evolutionary conservation of alternative poly(A) site choice.CFIm25 links alternative polyadenylation to glioblastoma tumour suppression.Viral miRNA targeting of bicistronic and polycistronic transcripts Annotation of the zebrafish genome through an integrated transcriptomic and proteomic analysis.Differential microRNA regulation correlates with alternative polyadenylation pattern between breast cancer and normal cells.CERKL knockdown causes retinal degeneration in zebrafish.Differential transcript isoform usage pre- and post-zygotic genome activation in zebrafish IsoSCM: improved and alternative 3' UTR annotation using multiple change-point inference.The miR-30 microRNA family targets smoothened to regulate hedgehog signalling in zebrafish early muscle development.Accurate identification of polyadenylation sites from 3' end deep sequencing using a naive Bayes classifier.Microarray meta-analysis of RNA-binding protein functions in alternative polyadenylation Improved annotation of 3' untranslated regions and complex loci by combination of strand-specific direct RNA sequencing, RNA-Seq and ESTs.Profiling hepatic microRNAs in zebrafish: fluoxetine exposure mimics a fasting response that targets AMP-activated protein kinase (AMPK)Post-transcriptional regulation of early embryogenesis Systematic imaging reveals features and changing localization of mRNAs in Drosophila development RNA-Seq profiling of single bovine oocyte transcript abundance and its modulation by cytoplasmic polyadenylation.Dynamic evolution and biogenesis of small RNAs during sex reversal.Evaluation of two statistical methods provides insights into the complex patterns of alternative polyadenylation site switching PAT-seq: a method to study the integration of 3'-UTR dynamics with gene expression in the eukaryotic transcriptome.Two Virus-Induced MicroRNAs Known Only from Teleost Fishes Are Orthologues of MicroRNAs Involved in Cell Cycle Control in Humans High-throughput and quantitative genome-wide messenger RNA sequencing for molecular phenotyping.

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Extensive alternative polyadenylation during zebrafish development

http://www.wikidata.org/entity/Q24633200

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2012 nî lūn-bûn

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2012 թուականի Հոկտեմբերին հրատարակուած գիտական յօդուած

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2012 թվականի հոտեմբերին հրատարակված գիտական հոդված

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2012年の論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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2012年论文

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name

Extensive alternative polyadenylation during zebrafish development

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Extensive alternative polyadenylation during zebrafish development

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Extensive alternative polyadenylation during zebrafish development

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type

label

Extensive alternative polyadenylation during zebrafish development

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Extensive alternative polyadenylation during zebrafish development

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Extensive alternative polyadenylation during zebrafish development

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prefLabel

Extensive alternative polyadenylation during zebrafish development

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Extensive alternative polyadenylation during zebrafish development

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Extensive alternative polyadenylation during zebrafish development

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Genome Research

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Extensive alternative polyadenylation during zebrafish development

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Alena Shkumatava

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Alexander O Subtelny

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Calvin H Jan

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Automated generation of heuristics for biological sequence comparison

Principles of microRNA-target recognition

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Adenylation and exosome-mediated degradation of cotranscriptionally cleaved pre-messenger RNA in human cells

Polyadenylation of ribosomal RNA in human cells

Cytoplasmic polyadenylation in development and beyond

A large-scale analysis of mRNA polyadenylation of human and mouse genes

Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites

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644481

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10.1101/GR.139733.112

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10

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22

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David P. Bartel

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227856844

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3460199

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