Orthology prediction methods: a quality assessment using curated protein families - Wikidata - wikimedia - TriplyDB

Orthology prediction methods: a quality assessment using curated protein families

Orthology prediction methods: a quality assessment using curated protein families

http://www.wikidata.org/entity/Q24635071

about

OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges Inferring Orthologs: Open Questions and Perspectives OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous-Paleogene boundary How old is my gene?Toward community standards in the quest for orthologs eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences eggNOG v4.0: nested orthology inference across 3686 organisms Standardized benchmarking in the quest for orthologs Evolutionary force in confamiliar marine vertebrates of different temperature realms: adaptive trends in zoarcid fish transcriptomes Ortholog-Finder: A Tool for Constructing an Ortholog Data Set.Orthology detection combining clustering and synteny for very large datasets Expansion of biological pathways based on evolutionary inference What evidence is there for the homology of protein-protein interactions?Orthologous gene clusters and taxon signature genes for viruses of prokaryotes Inferring hierarchical orthologous groups from orthologous gene pairs.The impact of gene duplication, insertion, deletion, lateral gene transfer and sequencing error on orthology inference: a simulation study POGs2: a web portal to facilitate cross-species inferences about protein architecture and function in plants Archaeal Clusters of Orthologous Genes (arCOGs): An Update and Application for Analysis of Shared Features between Thermococcales, Methanococcales, and Methanobacteriales A phylogeny-based benchmarking test for orthology inference reveals the limitations of function-based validation A meta-approach for improving the prediction and the functional annotation of ortholog groups.Identifying single copy orthologs in Metazoa.Enrichment of Triticum aestivum gene annotations using ortholog cliques and gene ontologies in other plants.Domain similarity based orthology detection Quest for Orthologs Entails Quest for Tree of Life: In Search of the Gene Stream.A New Orthology Assessment Method for Phylogenomic Data: Unrooted Phylogenetic Orthology.Orthograph: a versatile tool for mapping coding nucleotide sequences to clusters of orthologous genes.Rapid genome reshaping by multiple-gene loss after whole-genome duplication in teleost fish suggested by mathematical modeling Hypoxia Inducible Factor (HIF) transcription factor family expansion, diversification, divergence and selection in eukaryotes.Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants Annotated genes and nonannotated genomes: cross-species use of Gene Ontology in ecology and evolution research.Improved orthology inference with Hieranoid 2.Evolutionary Analyses of GRAS Transcription Factors in Angiosperms.ProtPhylo: identification of protein-phenotype and protein-protein functional associations via phylogenetic profiling.Biologically feasible gene trees, reconciliation maps and informative triples.Transcriptologs: A Transcriptome-Based Approach to Predict Orthology Relationships.Comprehensive analysis of correlations among codon usage bias, gene expression, and substitution rate in Arachis duranensis and Arachis ipaënsis orthologs.

P2860

Q21146630-837516FB-41BF-4076-B2BD-D40E5B49D7A7 Q24595539-DC6C38D2-AADA-44C6-824B-C98BB27565C6 Q24619608-DDD5BC38-8A51-4B1D-AE73-5C39706BEA10 Q26766407-9F6BA06D-CF0D-46AF-B607-78117CFCE58A Q28650440-6ABDF4FB-1256-4E45-B9E0-645951BF162B Q28654997-6E457117-AE00-41A2-97CF-7486DF5E1DD1 Q28662007-4F8C2B14-F61A-4301-8038-661E8F5E7F9E Q28731237-F118C191-F2A7-4B42-AA11-1EE0D91B288D Q30002335-E262592B-9AB3-420C-9B43-3D4B92DC9E3E Q30002339-0DBE828B-5433-460C-9B3B-D523B6ACABE1 Q30002371-FAEDC41A-102D-408F-B26C-BC945C588014 Q30422131-45765003-D77E-4D1C-84E2-12332EEAB1B3 Q31037819-A0540886-F9E4-4A14-BFB2-2A3F243A86E7 Q34066656-9AE36C97-E9A7-4D70-9622-DC8AF6802EF0 Q34229297-9B56F0DF-0DA1-498A-BE21-D211B7425FB8 Q34426308-C06C501E-449C-476C-BAAA-75D538DD9C83 Q34504150-9221AD28-4D1D-4FBB-A0D9-56FCE10E96FE Q34558713-02D02B0C-E0C0-47C2-9643-64792BD5F724 Q34602743-0ADB6F2C-F710-44E8-A223-121F9D799F46 Q35067830-C1B30EBD-1765-470E-9D57-865A4A04E51D Q35334249-C7D331EF-A928-45D2-A3F8-8E49BD4DB55B Q35392687-F6233F32-21BC-498E-98C7-77936846633D Q35540656-7A0883F0-EF71-4C91-BFF4-46A330E18C82 Q35586786-280CF812-0FEB-4DF3-BFB3-7EAA62A63A06 Q35590938-C4B1F827-AAEE-4FF1-8CBF-AEBD2AC65361 Q35629091-5230AA6C-958D-47BE-942A-C3A2A56FFC2B Q35915014-DE7AFB73-C7AE-4091-9775-154CD055337A Q36020552-2D9E9406-C4F1-4B36-9246-F7BCC11CF723 Q36283309-89799C51-CC60-4132-98BE-E6F64D247F4D Q36355017-CF17B210-10A8-40CA-ABEC-7F8FA604DBAE Q36405526-BEE5738D-9C19-4F19-883B-D98A7C8E2FC9 Q36500812-05E5082C-97E2-46A3-989F-57D4474A7BDC Q36637322-CBC1BE17-295D-4033-851D-F899553D95DA Q38114153-177C110D-A043-4D6B-9A92-30A949179D50 Q39016286-0B3EBB0C-6099-4B34-B469-AFC240A3778C Q39183010-361E2611-A6B5-45BF-A37C-2797CC0B7222 Q40958767-9B80DB4F-6A0F-47CD-8DF2-24A1498834EE Q41559602-8FF3F713-3090-4204-8098-EBA3783109F7 Q41876064-FF4E038F-B87D-4441-8781-BB3ED9C3ECBD Q43522759-35AA7236-831D-41CA-8145-C40FC8F6CD1E

P2860

Orthology prediction methods: a quality assessment using curated protein families

http://www.wikidata.org/entity/Q24635071

description

2011 nî lūn-bûn

@nan

2011 թուականի Հոկտեմբերին հրատարակուած գիտական յօդուած

@hyw

2011 թվականի հոտեմբերին հրատարակված գիտական հոդված

@hy

2011年の論文

@ja

2011年学术文章

@wuu

2011年学术文章

@zh-cn

2011年学术文章

@zh-hans

2011年学术文章

@zh-my

2011年学术文章

@zh-sg

2011年學術文章

@yue

name

Orthology prediction methods: a quality assessment using curated protein families

@ast

Orthology prediction methods: a quality assessment using curated protein families

@en

Orthology prediction methods: a quality assessment using curated protein families

@nl

type

label

Orthology prediction methods: a quality assessment using curated protein families

@ast

Orthology prediction methods: a quality assessment using curated protein families

@en

Orthology prediction methods: a quality assessment using curated protein families

@nl

prefLabel

Orthology prediction methods: a quality assessment using curated protein families

@ast

Orthology prediction methods: a quality assessment using curated protein families

@en

Orthology prediction methods: a quality assessment using curated protein families

@nl

P1433

Q24635071-FEA7C45B-C6A2-428E-A320-6896687E7CA3

P1476

Q24635071-655216AE-6D9C-4DD0-83DF-3C966A48A9C2

P2093

Q24635071-5090C09F-3B6A-4F1F-A92D-1AD449C1D67A

Q24635071-B0A708A0-1861-40FD-BC88-5B42C7E100C9

Q24635071-EFE3F8F3-AC69-41CD-BD49-9934BD0B4E5A

P2860

Q24635071-0220B280-1ED9-460E-9F9F-D142F2AE653C

Q24635071-05427BB4-44FE-413A-88C4-87B1123A7068

Q24635071-0982F12B-D0F3-41C2-9E57-0C05F9B1D696

Q24635071-0A92428B-823F-46C5-BB51-FDF4EC6B5060

Q24635071-100E657A-00B0-4632-A3B1-0EDE2144541B

Q24635071-1F89E8DA-452A-4A0C-83C1-9A7294B1BB92

Q24635071-21299B0E-CC31-4F0B-92ED-67A656A0CE0D

Q24635071-22622FC5-DA96-4212-8A87-4546EC0B5D58

Q24635071-24AB7D80-3595-4F75-A7A5-F3C999D1616E

Q24635071-2E405543-2D4F-4AA2-969C-5C704BBB5852

P304

Q24635071-48A44274-5520-468F-A7C5-F91C1248CEB9

P31

Q24635071-AF8D6C0E-7C62-42AF-B34A-EDEDA1527026

P356

Q24635071-926BC858-662D-4EC6-BB88-6A9630564F3C

P407

Q24635071-074E7C4E-1DDE-4E1E-9722-755B55B47C93

P433

Q24635071-49865834-96EC-48AC-B704-F8C9DC9503BF

P478

Q24635071-9DC37536-868D-4EC5-8F81-B106F33D4D1A

P50

Q24635071-1895724D-5BB5-4B8E-96B7-8101F06EF306

Q24635071-36C3E3E3-2203-4769-9C94-8A1854107818

Q24635071-751563E9-4B9A-42CE-860D-6BB0E9212022

Q24635071-7BA0BC7E-E77E-4093-B848-DB1CC14C099E

P577

Q24635071-24D8B95D-DD33-411C-9442-DE4113F2FE5C

P5875

Q24635071-2EED0BBD-DBA1-47C9-BC3C-89E035631382

P698

Q24635071-8AEF6A2A-56B7-404D-9375-3CD84563AA99

P932

Q24635071-A4102396-0786-4DF0-993D-0C2883BFBEFE

P356

P1433

P1476

Orthology prediction methods: a quality assessment using curated protein families

@en

P2093

Kalliopi Trachana

http://www.w3.org/2001/XMLSchema#string

Tomas A Larsson

http://www.w3.org/2001/XMLSchema#string

Wei-Hua Chen

http://www.w3.org/2001/XMLSchema#string

P2860

Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization

The dynamic genome of Hydra

The Trichoplax genome and the nature of placozoans

The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans

OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups.

Complex genomic rearrangements lead to novel primate gene function

OrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011

OMA 2011: orthology inference among 1000 complete genomes

PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions

MUSCLE: multiple sequence alignment with high accuracy and high throughput

P304

769-80

http://www.w3.org/2001/XMLSchema#string

P31

scholarly article

P356

10.1002/BIES.201100062

http://www.w3.org/2001/XMLSchema#string

P407

P433

10

http://www.w3.org/2001/XMLSchema#string

P478

33

http://www.w3.org/2001/XMLSchema#string

P50

P577

2011-10-01T00:00:00Z

http://www.w3.org/2001/XMLSchema#dateTime

P5875

51582565

http://www.w3.org/2001/XMLSchema#string

P698

21853451

http://www.w3.org/2001/XMLSchema#string

P932

3193375

http://www.w3.org/2001/XMLSchema#string