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BioJava: an open-source framework for bioinformatics

BioJava: an open-source framework for bioinformatics

http://www.wikidata.org/entity/Q24654080

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Pre-calculated protein structure alignments at the RCSB PDB website Armadillo 1.1: an original workflow platform for designing and conducting phylogenetic analysis and simulations Bioclipse 2: a scriptable integration platform for the life sciences Genoviz Software Development Kit: Java tool kit for building genomics visualization applications The DDBJ Japanese Genotype-phenotype Archive for genetic and phenotypic human data Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics MUSI: an integrated system for identifying multiple specificity from very large peptide or nucleic acid data sets The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants JEnsembl: a version-aware Java API to Ensembl data systems BioJava: an open-source framework for bioinformatics in 2012 BioRuby: bioinformatics software for the Ruby programming language Biopython: freely available Python tools for computational molecular biology and bioinformatics Visual programming for next-generation sequencing data analytics Reference databases for taxonomic assignment in metagenomics Chem2Bio2RDF: a semantic framework for linking and data mining chemogenomic and systems chemical biology data Bio.Phylo: A unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biopython BioTriangle: a web-accessible platform for generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*Genomes2Drugs: identifies target proteins and lead drugs from proteome data Community-driven computational biology with Debian Linux A reference guide for tree analysis and visualization Evidence of molecular evolution driven by recombination events influencing tropism in a novel human adenovirus that causes epidemic keratoconjunctivitis QSE: A new 3-D solvent exposure measure for the analysis of protein structure.JCoDA: a tool for detecting evolutionary selection.Coalescent: an open-source and scalable framework for exact calculations in coalescent theory.Scribl: an HTML5 Canvas-based graphics library for visualizing genomic data over the web HPDB-Haskell library for processing atomic biomolecular structures in Protein Data Bank format.Polyglot programming in applications used for genetic data analysis.BiDiBlast: comparative genomics pipeline for the PC.The p53HMM algorithm: using profile hidden markov models to detect p53-responsive genes Quality assurance for the query and distribution systems of the RCSB Protein Data Bank.Identification of gene co-regulatory modules and associated cis-elements involved in degenerative heart disease Annotation and visualization of endogenous retroviral sequences using the Distributed Annotation System (DAS) and eBioX.A quick guide for developing effective bioinformatics programming skills MUSTANG-MR structural sieving server: applications in protein structural analysis and crystallography MochiView: versatile software for genome browsing and DNA motif analysis.MassSieve: panning MS/MS peptide data for proteins.Predicting DNA-binding specificities of eukaryotic transcription factors An intuitive Python interface for Bioconductor libraries demonstrates the utility of language translators iPhy: an integrated phylogenetic workbench for supermatrix analyses

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BioJava: an open-source framework for bioinformatics

http://www.wikidata.org/entity/Q24654080

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2008 nî lūn-bûn

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2008 թվականի սեպտեմբերին հրատարակված գիտական հոդված

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2008年の論文

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2008年論文

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2008年論文

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2008年論文

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BioJava: an open-source framework for bioinformatics

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BioJava: an open-source framework for bioinformatics

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P2860

The Protein Data Bank

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

The Bioperl toolkit: Perl modules for the life sciences

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

The Bio* toolkits--a brief overview

NEXUS: an extensible file format for systematic information

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