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The Adult Mouse Anatomical Dictionary: a tool for annotating and integrating data

The Adult Mouse Anatomical Dictionary: a tool for annotating and integrating data

http://www.wikidata.org/entity/Q24797468

about

Uberon, an integrative multi-species anatomy ontology Developing a kidney and urinary pathway knowledge base CELDA -- an ontology for the comprehensive representation of cells in complex systems Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon Integrating phenotype ontologies across multiple species The mouse Gene Expression Database (GXD): 2011 update The Mammalian Phenotype Ontology as a tool for annotating, analyzing and comparing phenotypic information The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals Representation of anatomy in online atlases and databases: a survey and collection of patterns for interface design Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE)Histopathology reveals correlative and unique phenotypes in a high-throughput mouse phenotyping screen Toward knowledge support for analysis and interpretation of complex traits CellFinder: a cell data repository The Gene Ontology (GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy Ontology) and other recent developments InterMOD: integrated data and tools for the unification of model organism research A unified anatomy ontology of the vertebrate skeletal system Towards valid and reusable reference alignments - ten basic quality checks for ontology alignments and their application to three different reference data sets aGEM: an integrative system for analyzing spatial-temporal gene-expression information Phenotyping structural abnormalities in mouse embryos using high-resolution episcopic microscopy Phenotype ontologies and cross-species analysis for translational research The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data PhenoMiner: from text to a database of phenotypes associated with OMIM diseases.Experience in Aligning Anatomical Ontologies.The need for data standards in zoomorphology.Mouse anatomy ontologies: enhancements and tools for exploring and integrating biomedical data.Improving disease gene prioritization by comparing the semantic similarity of phenotypes in mice with those of human diseases.Of mice and men: aligning mouse and human anatomies.Alignment of multiple ontologies of anatomy: deriving indirect mappings from direct mappings to a reference.MPHASYS: a mouse phenotype analysis system.Celsius: a community resource for Affymetrix microarray data.Representing default knowledge in biomedical ontologies: application to the integration of anatomy and phenotype ontologies.Simplified ontologies allowing comparison of developmental mammalian gene expression.Gene Ontology annotations: what they mean and where they come from.Integrating mouse anatomy and pathology ontologies into a phenotyping database: tools for data capture and training Progress in updating the European Radiobiology Archives.Muscle Research and Gene Ontology: New standards for improved data integration.PhenoGO: an integrated resource for the multiscale mining of clinical and biological data.Practical application of ontologies to annotate and analyse large scale raw mouse phenotype data A data-capture tool for mouse pathology phenotyping.

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The Adult Mouse Anatomical Dictionary: a tool for annotating and integrating data

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John P Corradi

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Martin Ringwald

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Mary Mangan

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Terry F Hayamizu

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An ontology for cell types

The Mammalian Phenotype Ontology as a tool for annotating, analyzing and comparing phenotypic information

Using ontologies to describe mouse phenotypes.

The Gene Ontology (GO) database and informatics resource

A reference ontology for biomedical informatics: the Foundational Model of Anatomy

EMAP and EMAGE: a framework for understanding spatially organized data.

The SOFG Anatomy Entry List (SAEL): an annotation tool for functional genomics data

An internet-accessible database of mouse developmental anatomy based on a systematic nomenclature.

Enhancing quality of retrieval through concept edit history.

Pathbase: a database of mutant mouse pathology

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