Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data
about
The transcriptional network activated by Cln3 cyclin at the G1-to-S transition of the yeast cell cycleExtraction of transcription regulatory signals from genome-wide DNA-protein interaction dataDynamic modeling of cis-regulatory circuits and gene expression prediction via cross-gene identification.Inferring yeast cell cycle regulators and interactions using transcription factor activities.CAGER: classification analysis of gene expression regulation using multiple information sourcesPredicting transcription factor activities from combined analysis of microarray and ChIP data: a partial least squares approachIdentifying transcription factor functions and targets by phenotypic activation.Perturbation-based analysis and modeling of combinatorial regulation in the yeast sulfur assimilation pathway.Profiling condition-specific, genome-wide regulation of mRNA stability in yeast.Transcriptional network structure has little effect on the rate of regulatory evolution in yeastPeakRegressor identifies composite sequence motifs responsible for STAT1 binding sites and their potential rSNPsModeling post-transcriptional regulation activity of small non-coding RNAs in Escherichia coli.Integrative analysis of C. elegans modENCODE ChIP-seq data sets to infer gene regulatory interactions.Inferring functional transcription factor-gene binding pairs by integrating transcription factor binding data with transcription factor knockout dataReconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities.Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data.Analysis of time-series gene expression data: methods, challenges, and opportunities.Reconstructing gene-regulatory networks from time series, knock-out data, and prior knowledge.Identifying regulatory targets of cell cycle transcription factors using gene expression and ChIP-chip data.A modular approach for integrative analysis of large-scale gene-expression and drug-response data.REGNET: mining context-specific human transcription networks using composite genomic information.Modelling the network of cell cycle transcription factors in the yeast Saccharomyces cerevisiae.Inferring direct regulatory targets from expression and genome location analyses: a comparison of transcription factor deletion and overexpression.Computational reconstruction of transcriptional regulatory modules of the yeast cell cycle.Connectivity in the yeast cell cycle transcription network: inferences from neural networks.Group SCAD regression analysis for microarray time course gene expression data.A statistical method to incorporate biological knowledge for generating testable novel gene regulatory interactions from microarray experimentsDissecting complex transcriptional responses using pathway-level scores based on prior informationInferring activity changes of transcription factors by binding association with sorted expression profilesPrioritization of gene regulatory interactions from large-scale modules in yeast.Systematic identification of cell cycle regulated transcription factors from microarray time series dataStatistical modeling of transcription factor binding affinities predicts regulatory interactions.A semi-supervised method for predicting transcription factor-gene interactions in Escherichia coli.Inferring condition-specific modulation of transcription factor activity in yeast through regulon-based analysis of genomewide expression.Systematic identification of yeast cell cycle transcription factors using multiple data sources.A primer on regression methods for decoding cis-regulatory logic.DISTILLER: a data integration framework to reveal condition dependency of complex regulons in Escherichia coli.Alignment and prediction of cis-regulatory modules based on a probabilistic model of evolution.Using network component analysis to dissect regulatory networks mediated by transcription factors in yeast.BRNI: Modular analysis of transcriptional regulatory programs.
P2860
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P2860
Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data
description
2004 nî lūn-bûn
@nan
2004 թուականի Մարտին հրատարակուած գիտական յօդուած
@hyw
2004 թվականի մարտին հրատարակված գիտական հոդված
@hy
2004年の論文
@ja
2004年論文
@yue
2004年論文
@zh-hant
2004年論文
@zh-hk
2004年論文
@zh-mo
2004年論文
@zh-tw
2004年论文
@wuu
name
Defining transcriptional netwo ...... nscription factor binding data
@ast
Defining transcriptional netwo ...... nscription factor binding data
@en
Defining transcriptional netwo ...... nscription factor binding data
@nl
type
label
Defining transcriptional netwo ...... nscription factor binding data
@ast
Defining transcriptional netwo ...... nscription factor binding data
@en
Defining transcriptional netwo ...... nscription factor binding data
@nl
prefLabel
Defining transcriptional netwo ...... nscription factor binding data
@ast
Defining transcriptional netwo ...... nscription factor binding data
@en
Defining transcriptional netwo ...... nscription factor binding data
@nl
P2093
P2860
P3181
P356
P1433
P1476
Defining transcriptional netwo ...... nscription factor binding data
@en
P2093
Barrett C Foat
Harmen J Bussemaker
P2860
P2888
P3181
P356
10.1186/1471-2105-5-31
P407
P577
2004-03-18T00:00:00Z
P5875
P6179
1018683521