metaSHARK: software for automated metabolic network prediction from DNA sequence and its application to the genomes of Plasmodium falciparum and Eimeria tenella - Wikidata - wikimedia - TriplyDB

metaSHARK: software for automated metabolic network prediction from DNA sequence and its application to the genomes of Plasmodium falciparum and Eimeria tenella

metaSHARK: software for automated metabolic network prediction from DNA sequence and its application to the genomes of Plasmodium falciparum and Eimeria tenella

http://www.wikidata.org/entity/Q24798924

about

The genome of the obligate intracellular parasite Trachipleistophora hominis: new insights into microsporidian genome dynamics and reductive evolution The transferome of metabolic genes explored: analysis of the horizontal transfer of enzyme encoding genes in unicellular eukaryotes The RAVEN toolbox and its use for generating a genome-scale metabolic model for Penicillium chrysogenum Genome-scale reconstruction of metabolic network for a halophilic extremophile, Chromohalobacter salexigens DSM 3043 A protocol for generating a high-quality genome-scale metabolic reconstruction The BioPAX community standard for pathway data sharing iRsp1095: a genome-scale reconstruction of the Rhodobacter sphaeroides metabolic network Reconstruction of biochemical networks in microorganisms GEM System: automatic prototyping of cell-wide metabolic pathway models from genomes.Accelerating the reconstruction of genome-scale metabolic networks.Toward the automated generation of genome-scale metabolic networks in the SEED.Bioinformatic analysis of the neprilysin (M13) family of peptidases reveals complex evolutionary and functional relationships MADIBA: a web server toolkit for biological interpretation of Plasmodium and plant gene clusters Arena3D: visualization of biological networks in 3D.A unique dual activity amino acid hydroxylase in Toxoplasma gondii.Machine learning methods for metabolic pathway prediction.Comparative genomics of metabolic networks of free-living and parasitic eukaryotes Eating at the table of another: metabolomics of host-parasite interactions.Comparative genomics of pneumocystis species suggests the absence of genes for myo-inositol synthesis and reliance on inositol transport and metabolism.Novel analysis of oceanic surface water metagenomes suggests importance of polyphosphate metabolism in oligotrophic environments.SYSTOMONAS--an integrated database for systems biology analysis of Pseudomonas.A systems biology approach to reconcile metabolic network models with application to Synechocystis sp. PCC 6803 for biofuel production.Application of Top-Down and Bottom-up Systems Approaches in Ruminant Physiology and Metabolism.Quantification of global transcription patterns in prokaryotes using spotted microarrays Vitamin and cofactor biosynthesis pathways in Plasmodium and other apicomplexan parasites.eGenomics: genomes and the environment.Screening of highly expressed mycobacterial genes identifies Rv3615c as a useful differential diagnostic antigen for the Mycobacterium tuberculosis complex Malaria - an overview.Functional genomics of Plasmodium falciparum using metabolic modelling and analysis Uncovering metabolic pathways relevant to phenotypic traits of microbial genomes.Graph methods for the investigation of metabolic networks in parasitology.metaTIGER: a metabolic evolution resource.Genome-scale metabolic model in guiding metabolic engineering of microbial improvement.Software platforms to facilitate reconstructing genome-scale metabolic networks.Pantothenic acid biosynthesis in the parasite Toxoplasma gondii: a target for chemotherapy.A comprehensive software suite for the analysis of cDNAs.metaSHARK: a WWW platform for interactive exploration of metabolic networks.EC2KEGG: a command line tool for comparison of metabolic pathways.ModEnzA: Accurate Identification of Metabolic Enzymes Using Function Specific Profile HMMs with Optimised Discrimination Threshold and Modified Emission Probabilities.The conservation and evolutionary modularity of metabolism.

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metaSHARK: software for automated metabolic network prediction from DNA sequence and its application to the genomes of Plasmodium falciparum and Eimeria tenella

http://www.wikidata.org/entity/Q24798924

description

2005 nî lūn-bûn

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2005年の論文

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Nucleic Acids Research

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John W Pinney

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P2860

GeneWise and Genomewise

Genome sequence of the human malaria parasite Plasmodium falciparum

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

BRENDA, the enzyme database: updates and major new developments

MUSCLE: multiple sequence alignment with high accuracy and high throughput

Enzyme-specific profiles for genome annotation: PRIAM

Shotgun sequencing of the human transcriptome with ORF expressed sequence tags

Profile hidden Markov models

The KEGG resource for deciphering the genome

A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks

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1399-409

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10.1093/NAR/GKI285

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4

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33

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David R. Westhead

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2005-01-01T00:00:00Z

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Plasmodium falciparum

Eimeria tenella

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552966

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