GOTree Machine (GOTM): a web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchies - Wikidata - wikimedia - TriplyDB

GOTree Machine (GOTM): a web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchies

GOTree Machine (GOTM): a web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchies

http://www.wikidata.org/entity/Q24801173

about

The DISC1 pathway modulates expression of neurodevelopmental, synaptogenic and sensory perception genes Identification of common differentially expressed genes in urinary bladder cancer A family of human microRNA genes from miniature inverted-repeat transposable elements Primary and secondary transcriptional effects in the developing human Down syndrome brain and heart Protective effects and potential mechanisms of Pien Tze Huang on cerebral chronic ischemia and hypertensive stroke A systematic approach to infer biological relevance and biases of gene network structures.Integrative analysis of high-throughput RNAi screen data identifies the FER and CRKL tyrosine kinases as new regulators of the mitogenic ERK-dependent pathways in transformed cells Clarin-1, encoded by the Usher Syndrome III causative gene, forms a membranous microdomain: possible role of clarin-1 in organizing the actin cytoskeleton A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists High-throughput analysis of promoter occupancy reveals direct neural targets of FOXP2, a gene mutated in speech and language disorders Fenton chemistry and oxidative stress mediate the toxicity of the beta-amyloid peptide in a Drosophila model of Alzheimer's disease Shotgun proteomics implicates protease inhibition and complement activation in the antiinflammatory properties of HDL DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists GOToolBox: functional analysis of gene datasets based on Gene Ontology GeneKeyDB: a lightweight, gene-centric, relational database to support data mining environments.Computational, integrative, and comparative methods for the elucidation of genetic coexpression networks Mechanisms of aging in senescence-accelerated mice VAMPIRE microarray suite: a web-based platform for the interpretation of gene expression data GFINDer: genetic disease and phenotype location statistical analysis and mining of dynamically annotated gene lists.Recent additions and improvements to the Onto-Tools.WebGestalt: an integrated system for exploring gene sets in various biological contexts.Analysis of the interaction of extracellular matrix and phenotype of bladder cancer cells.Comparison of gene expression signatures of diamide, H2O2 and menadione exposed Aspergillus nidulans cultures--linking genome-wide transcriptional changes to cellular physiology.A new method for gene discovery in large-scale microarray data Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists Doxorubicin in vivo rapidly alters expression and translation of myocardial electron transport chain genes, leads to ATP loss and caspase 3 activation Unique patterns of molecular profiling between human prostate cancer LNCaP and PC-3 cells Dichlorvos exposure results in large scale disruption of energy metabolism in the liver of the zebrafish, Danio rerio DNA methylation analysis of chromosome 21 gene promoters at single base pair and single allele resolution Microgenomic analysis in skeletal muscle: expression signatures of individual fast and slow myofibers Characterization of the endothelial cell cytoskeleton following HLA class I ligation Quantitative analysis of gene expression in living adult neural stem cells by gene trapping Transcriptome analysis of spermatogenically regressed, recrudescent and active phase testis of seasonally breeding wall lizards Hemidactylus flaviviridis Detection, validation, and downstream analysis of allelic variation in gene expression GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists WEGO: a web tool for plotting GO annotations Combining evidence, biomedical literature and statistical dependence: new insights for functional annotation of gene sets Revisiting the missing protein-coding gene catalog of the domestic dog Chronic alcohol consumption from adolescence-to-adulthood in mice--hypothalamic gene expression changes in the dilated cardiomyopathy signaling pathway.

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P2860

GOTree Machine (GOTM): a web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchies

http://www.wikidata.org/entity/Q24801173

description

2004 nî lūn-bûn

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2004 թուականի Փետրուարին հրատարակուած գիտական յօդուած

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2004 թվականի փետրվարին հրատարակված գիտական հոդված

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2004年の論文

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GOTree Machine (GOTM): a web-b ...... sing Gene Ontology hierarchies

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BMC Bioinformatics

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GOTree Machine (GOTM): a web-b ...... sing Gene Ontology hierarchies

@en

P2093

Bing Zhang

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Denise Schmoyer

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Jay Snoddy

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Stefan Kirov

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P2860

Gene ontology: tool for the unification of biology

Mining microarray expression data by literature profiling.

GoMiner: a resource for biological interpretation of genomic and proteomic data

MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data

Peroxisomes and ether lipid biosynthesis in rat testis and epididymis

Large-scale analysis of the human and mouse transcriptomes.

Creating the gene ontology resource: design and implementation

GEPAS: A web-based resource for microarray gene expression data analysis

A literature network of human genes for high-throughput analysis of gene expression.

Cooperation of liver cells in health and disease.

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scholarly article

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10.1186/1471-2105-5-16

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8688085

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1033139728

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14975175

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373441

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