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The effects of normalization on the correlation structure of microarray data

The effects of normalization on the correlation structure of microarray data

http://www.wikidata.org/entity/Q24810682

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Assessing stability of gene selection in microarray data analysis.Strategic applications of gene expression: from drug discovery/development to bedside Weighted-SAMGSR: combining significance analysis of microarray-gene set reduction algorithm with pathway topology-based weights to select relevant genes Comparative analysis of microarray normalization procedures: effects on reverse engineering gene networks A nitty-gritty aspect of correlation and network inference from gene expression data False discovery rate control in two-stage designs.Identification of human HK genes and gene expression regulation study in cancer from transcriptomics data analysis.Comments on 'Bayesian hierarchical error model for analysis of gene expression data'.Study design and data analysis considerations for the discovery of prognostic molecular biomarkers: a case study of progression free survival in advanced serous ovarian cancer.How high is the level of technical noise in microarray data?Revisiting adverse effects of cross-hybridization in Affymetrix gene expression data: do they matter for correlation analysis?The properties of high-dimensional data spaces: implications for exploring gene and protein expression data.Discovery of agents that eradicate leukemia stem cells using an in silico screen of public gene expression data.Empirical study of supervised gene screening False discovery rate paradigms for statistical analyses of microarray gene expression data.Peripheral arterial occlusive disease: global gene expression analyses suggest a major role for immune and inflammatory responses.Detecting intergene correlation changes in microarray analysis: a new approach to gene selection.Comments on the analysis of unbalanced microarray data.Refining gene signatures: a Bayesian approach.Analysis and computational dissection of molecular signature multiplicity A new gene selection procedure based on the covariance distance.Time-series clustering of gene expression in irradiated and bystander fibroblasts: an application of FBPA clustering.Pathway analysis of expression data: deciphering functional building blocks of complex diseases.Reproducible cancer biomarker discovery in SELDI-TOF MS using different pre-processing algorithms.Extensive up-regulation of gene expression in cancer: the normalised use of microarray data.Evaluating reproducibility of differential expression discoveries in microarray studies by considering correlated molecular changes.Large datasets in biomedicine: a discussion of salient analytic issues.Why is it so difficult to data mine relevant genome-scale biomarkers?The impact of quantile and rank normalization procedures on the testing power of gene differential expression analysis Mixed-model coexpression: calculating gene coexpression while accounting for expression heterogeneity.Evaluation of bias-variance trade-off for commonly used post-summarizing normalization procedures in large-scale gene expression studies.Nonlinear dependence in the discovery of differentially expressed genes.Systematic noise degrades gene co-expression signals but can be corrected.Is there an alternative to increasing the sample size in microarray studies?Identification of reproducible drug-resistance-related dysregulated genes in small-scale cancer cell line experiments.An empirical Bayesian approach for identifying differential coexpression in high-throughput experiments.Utility of correlation measures in analysis of gene expression.Effect of normalization on statistical and biological interpretation of gene expression profiles.Sample size reassessment for a two-stage design controlling the false discovery rate.An efficient method to identify differentially expressed genes in microarray experiments.

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P2860

The effects of normalization on the correlation structure of microarray data

http://www.wikidata.org/entity/Q24810682

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2005 nî lūn-bûn

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2005 թուականի Մայիսին հրատարակուած գիտական յօդուած

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2005年の論文

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2005年論文

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2005年論文

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2005年論文

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2005年論文

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2005年論文

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2005年论文

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name

The effects of normalization on the correlation structure of microarray data

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The effects of normalization on the correlation structure of microarray data

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The effects of normalization on the correlation structure of microarray data

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The effects of normalization on the correlation structure of microarray data

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The effects of normalization on the correlation structure of microarray data

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The effects of normalization on the correlation structure of microarray data

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The effects of normalization on the correlation structure of microarray data

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The effects of normalization on the correlation structure of microarray data

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The effects of normalization on the correlation structure of microarray data

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Andrew I Brooks

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Ndrei Yakovlev

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Xing Qiu

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P2860

Evaluation of normalization methods for microarray data

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

On differential variability of expression ratios: improving statistical inference about gene expression changes from microarray data.

Variable selection and pattern recognition with gene expression data generated by the microarray technology.

Discovering molecular pathways from protein interaction and gene expression data.

Testing for differentially-expressed genes by maximum-likelihood analysis of microarray data.

Adjustments and measures of differential expression for microarray data.

Estimation of false discovery rates in multiple testing: application to gene microarray data.

Genetic network inference: from co-expression clustering to reverse engineering.

A mixture model-based strategy for selecting sets of genes in multiclass response microarray experiments.

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