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New insights into metabolic properties of marine bacteria encoding proteorhodopsins

New insights into metabolic properties of marine bacteria encoding proteorhodopsins

http://www.wikidata.org/entity/Q24811174

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Proteorhodopsin phototrophy promotes survival of marine bacteria during starvation Function and regulation of Vibrio campbellii proteorhodopsin: acquired phototrophy in a classical organoheterotroph Energy starved Candidatus Pelagibacter ubique substitutes light-mediated ATP production for endogenous carbon respiration The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea In vitro characterization of a recombinant Blh protein from an uncultured marine bacterium as a beta-carotene 15,15'-dioxygenase Microbial community gene expression in ocean surface waters Retinal biosynthesis in fungi: characterization of the carotenoid oxygenase CarX from Fusarium fujikuroi Evidence for the ubiquity of mixotrophic bacteria in the upper ocean: implications and consequences Proteorhodopsin photosystem gene expression enables photophosphorylation in a heterologous host Sequence and intramolecular distance scoring analyses of microbial rhodopsins.Cross-protomer interaction with the photoactive site in oligomeric proteorhodopsin complexes Poles apart: Arctic and Antarctic Octadecabacter strains share high genome plasticity and a new type of xanthorhodopsin Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from a high altitude lake Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea An analysis of the Sargasso Sea resource and the consequences for database composition Taxonomy and evolution of bacteriochlorophyll a-containing members of the OM60/NOR5 clade of marine gammaproteobacteria: description of Luminiphilus syltensis gen. nov., sp. nov., reclassification of Haliea rubra as Pseudohaliea rubra gen. nov., com Marine Bacterial and Archaeal Ion-Pumping Rhodopsins: Genetic Diversity, Physiology, and Ecology.Novel primers reveal wider diversity among marine aerobic anoxygenic phototrophs Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea.A bioinformatician's guide to metagenomics.Gene clusters involved in isethionate degradation by terrestrial and marine bacteria.Constitutive expression of the proteorhodopsin gene by a flavobacterium strain representative of the proteorhodopsin-producing microbial community in the North Sea.Recent advances and future perspectives in microbial phototrophy in antarctic sea ice.The light-driven proton pump proteorhodopsin enhances bacterial survival during tough times.Functional characterization of flavobacteria rhodopsins reveals a unique class of light-driven chloride pump in bacteria.Photochemical and thermal stability of green and blue proteorhodopsins: implications for protein-based bioelectronic devices The Dark Side of the Mushroom Spring Microbial Mat: Life in the Shadow of Chlorophototrophs. II. Metabolic Functions of Abundant Community Members Predicted from Metagenomic Analyses.Chapter 4. Predicting and characterizing protein functions through matching geometric and evolutionary patterns of binding surfaces.Metagenomic identification of a novel salt tolerance gene from the human gut microbiome which encodes a membrane protein with homology to a brp/blh-family β-carotene 15,15'-monooxygenase.Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage.Proteorhodopsin-bearing bacteria in Antarctic sea ice.Stimulation of growth by proteorhodopsin phototrophy involves regulation of central metabolic pathways in marine planktonic bacteria Measuring community similarity with phylogenetic networks.Proteorhodopsin-like genes present in thermoacidophilic high-mountain microbial communities.Light stimulates growth of proteorhodopsin-containing marine Flavobacteria.Abundant proteorhodopsin genes in the North Atlantic Ocean.Proteorhodopsins: an array of physiological roles?Bacterial, archaeal and viral-like rhodopsins from the Red Sea.Retinoid production using metabolically engineered Escherichia coli with a two-phase culture system.Analysis of cbbL, nifH, and pufLM in Soils from the Sør Rondane Mountains, Antarctica, Reveals a Large Diversity of Autotrophic and Phototrophic Bacteria.

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New insights into metabolic properties of marine bacteria encoding proteorhodopsins

http://www.wikidata.org/entity/Q24811174

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New insights into metabolic properties of marine bacteria encoding proteorhodopsins

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New insights into metabolic properties of marine bacteria encoding proteorhodopsins

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New insights into metabolic properties of marine bacteria encoding proteorhodopsins

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New insights into metabolic properties of marine bacteria encoding proteorhodopsins

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New insights into metabolic properties of marine bacteria encoding proteorhodopsins

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New insights into metabolic properties of marine bacteria encoding proteorhodopsins

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New insights into metabolic properties of marine bacteria encoding proteorhodopsins

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New insights into metabolic properties of marine bacteria encoding proteorhodopsins

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New insights into metabolic properties of marine bacteria encoding proteorhodopsins

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New insights into metabolic properties of marine bacteria encoding proteorhodopsins

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Gazalah Sabehi

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John L Spudich

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Joseph Hirschberg

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Kwang-Hwan Jung

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Ranga Partha

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Tal Isaacson

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P2860

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

Diversification and spectral tuning in marine proteorhodopsins

Characterization of uncultivated prokaryotes: isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon

Two C or not two C: recurrent disruption of Zn-ribbons, gene duplication, lineage-specific gene loss, and horizontal gene transfer in evolution of bacterial ribosomal proteins

Environmental genome shotgun sequencing of the Sargasso Sea

Bacterial rhodopsin: evidence for a new type of phototrophy in the sea

Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage.

Proteomic analysis of novel marine bacteria using MALDI and ESI mass spectrometry

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