STITCH 4: integration of protein-chemical interactions with user data - Wikidata - wikimedia - TriplyDB

STITCH 4: integration of protein-chemical interactions with user data

STITCH 4: integration of protein-chemical interactions with user data

http://www.wikidata.org/entity/Q27136674

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A survey on the computational approaches to identify drug targets in the postgenomic era DRABAL: novel method to mine large high-throughput screening assays using Bayesian active learning ChemDIS: a chemical–disease inference system based on chemical–protein interactions BioTriangle: a web-accessible platform for generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions Many InChIs and quite some feat The Use of Chemical-Chemical Interaction and Chemical Structure to Identify New Candidate Chemicals Related to Lung Cancer Deciphering Signaling Pathway Networks to Understand the Molecular Mechanisms of Metformin Action Qualitative and Quantitative Protein Complex Prediction Through Proteome-Wide Simulations Potential Compounds for Oral Cancer Treatment: Resveratrol, Nimbolide, Lovastatin, Bortezomib, Vorinostat, Berberine, Pterostilbene, Deguelin, Andrographolide, and Colchicine PharmDB-K: Integrated Bio-Pharmacological Network Database for Traditional Korean Medicine A Drug-Centric View of Drug Development: How Drugs Spread from Disease to Disease PubMedPortable: A Framework for Supporting the Development of Text Mining Applications The drug-minded protein interaction database (DrumPID) for efficient target analysis and drug development Combining Chemical Profiling and Network Analysis to Investigate the Pharmacology of Complex Prescriptions in Traditional Chinese Medicine A Systematic Framework for Drug Repositioning from Integrated Omics and Drug Phenotype Profiles Using Pathway-Drug Network Predictive characterization of hypothetical proteins in Staphylococcus aureus NCTC 8325 Screening lifespan-extending drugs in Caenorhabditis elegans via label propagation on drug-protein networks Systematic discovery of drug action mechanisms by an integrated chemical genomics approach: identification of functional disparities between azacytidine and decitabine Comprehensive analysis of high-throughput screens with HiTSeekR CART-a chemical annotation retrieval toolkit Inferring gene targets of drugs and chemical compounds from gene expression profiles Towards understanding brain-gut-microbiome connections in Alzheimer's disease STRING v10: protein-protein interaction networks, integrated over the tree of life eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences STITCH 5: augmenting protein–chemical interaction networks with tissue and affinity data The SIDER database of drugs and side effects MMP-9- and NMDA receptor-mediated mechanism of diabetic renovascular remodeling and kidney dysfunction: hydrogen sulfide is a key modulator.Oasis: online analysis of small RNA deep sequencing data Identification of drug-specific pathways based on gene expression data: application to drug induced lung injury.Genomic Comparison of Indigenous African and Northern European Chickens Reveals Putative Mechanisms of Stress Tolerance Related to Environmental Selection Pressure TIPdb-3D: the three-dimensional structure database of phytochemicals from Taiwan indigenous plants.TCM-Mesh: The database and analytical system for network pharmacology analysis for TCM preparations.AlzhCPI: A knowledge base for predicting chemical-protein interactions towards Alzheimer's disease.Data-driven prediction of adverse drug reactions induced by drug-drug interactions.Contextualization of drug-mediator relations using evidence networks.Using Coexpression Protein Interaction Network Analysis to Identify Mechanisms of Danshensu Affecting Patients with Coronary Heart Disease.NCG 5.0: updates of a manually curated repository of cancer genes and associated properties from cancer mutational screenings.BalestraWeb: efficient online evaluation of drug-target interactions.Enriched transcription factor signatures in triple negative breast cancer indicates possible targeted therapies with existing drugs.DT-Web: a web-based application for drug-target interaction and drug combination prediction through domain-tuned network-based inference.

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P2860

STITCH 4: integration of protein-chemical interactions with user data

http://www.wikidata.org/entity/Q27136674

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2013 nî lūn-bûn

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2013 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած

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2013 թվականի նոյեմբերին հրատարակված գիտական հոդված

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2013年の論文

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2013年論文

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2013年論文

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2013年论文

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Nucleic Acids Research

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Sune Pletscher-Frankild

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Thomas H. Blicher

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P2860

Gene ontology: tool for the unification of biology

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

DrugBank 3.0: a comprehensive resource for 'omics' research on drugs

The RCSB Protein Data Bank: redesigned web site and web services

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

PID: the Pathway Interaction Database

GLIDA: GPCR-ligand database for chemical genomic drug discovery

The Chemistry Development Kit (CDK): an open-source Java library for Chemo- and Bioinformatics

Recent Developments of the Chemistry Development Kit (CDK) - An Open-Source Java Library for Chemo- and Bioinformatics

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608089

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10.1093/NAR/GKT1207

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Database issue

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42

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Lars Juhl Jensen

Damian Szklarczyk

Christian von Mering

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2013-11-28T00:00:00Z

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2014-01-01T00:00:00Z

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