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Sequence-based prediction of type III secreted proteins

Sequence-based prediction of type III secreted proteins

http://www.wikidata.org/entity/Q27317165

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Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence T3DB: an integrated database for bacterial type III secretion system The signal for signaling, found CoBaltDB: Complete bacterial and archaeal orfeomes subcellular localization database and associated resources Effective--a database of predicted secreted bacterial proteins ClubSub-P: Cluster-Based Subcellular Localization Prediction for Gram-Negative Bacteria and Archaea Salmonella effector proteins and host-cell responses Greasy tactics in the plant-pathogen molecular arms race Computational prediction of type III and IV secreted effectors in gram-negative bacteria Behind the lines-actions of bacterial type III effector proteins in plant cells The Structure and Function of Type III Secretion Systems Endofungal bacterium controls its host by an hrp type III secretion system.Detection and functional characterization of a 215 amino acid N-terminal extension in the Xanthomonas type III effector XopD The Chlamydia trachomatis type III secretion chaperone Slc1 engages multiple early effectors, including TepP, a tyrosine-phosphorylated protein required for the recruitment of CrkI-II to nascent inclusions and innate immune signaling The Chlamydia psittaci genome: a comparative analysis of intracellular pathogens A TAL-Based Reporter Assay for Monitoring Type III-Dependent Protein Translocation in Xanthomonas.Type III-Dependent Translocation of HrpB2 by a Nonpathogenic hpaABC Mutant of the Plant-Pathogenic Bacterium Xanthomonas campestris pv. vesicatoria Protein export according to schedule: architecture, assembly, and regulation of type III secretion systems from plant- and animal-pathogenic bacteria.Functional characterization of the type III secretion substrate specificity switch protein HpaC from Xanthomonas campestris pv. vesicatoria.Secretion of early and late substrates of the type III secretion system from Xanthomonas is controlled by HpaC and the C-terminal domain of HrcU.Prediction of type III secretion signals in genomes of gram-negative bacteria.Identification of a Campylobacter jejuni-secreted protein required for maximal invasion of host cells.Computational prediction of type III secreted proteins from gram-negative bacteria A predicted physicochemically distinct sub-proteome associated with the intracellular organelle of the anammox bacterium Kuenenia stuttgartiensis.The SdiA-regulated gene srgE encodes a type III secreted effector.T3SEdb: data warehousing of virulence effectors secreted by the bacterial Type III Secretion System.Genome sequence analyses of Pseudomonas savastanoi pv. glycinea and subtractive hybridization-based comparative genomics with nine pseudomonads.Multi-genome identification and characterization of chlamydiae-specific type III secretion substrates: the Inc proteins Evolution of an endofungal lifestyle: Deductions from the Burkholderia rhizoxinica genome.Analysis of the expression, secretion and translocation of the Salmonella enterica type III secretion system effector SteA Meta-analytic approach to the accurate prediction of secreted virulence effectors in gram-negative bacteria Functional and computational analysis of amino acid patterns predictive of type III secretion system substrates in Pseudomonas syringae.The type III secretion system is necessary for the development of a pathogenic and endophytic interaction between Herbaspirillum rubrisubalbicans and Poaceae.Quantification of the physiochemical constraints on the export of spider silk proteins by Salmonella type III secretion.Massive expansion of Ubiquitination-related gene families within the Chlamydiae.A novel C-terminal region within the multicargo type III secretion chaperone CesT contributes to effector secretion.Identification of novel type III secretion chaperone-substrate complexes of Chlamydia trachomatis.Using weakly conserved motifs hidden in secretion signals to identify type-III effectors from bacterial pathogen genomes.T3_MM: a Markov model effectively classifies bacterial type III secretion signals.Effective identification of bacterial type III secretion signals using joint element features.

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P2860

Sequence-based prediction of type III secreted proteins

http://www.wikidata.org/entity/Q27317165

description

2009 nî lūn-bûn

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2009 թուականի Ապրիլին հրատարակուած գիտական յօդուած

@hyw

2009 թվականի ապրիլին հրատարակված գիտական հոդված

@hy

2009年の論文

@ja

2009年論文

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2009年論文

@zh-hant

2009年論文

@zh-hk

2009年論文

@zh-mo

2009年論文

@zh-tw

2009年论文

@wuu

name

Sequence-based prediction of type III secreted proteins

@ast

Sequence-based prediction of type III secreted proteins

@en

Sequence-based prediction of type III secreted proteins

@nl

type

label

Sequence-based prediction of type III secreted proteins

@ast

Sequence-based prediction of type III secreted proteins

@en

Sequence-based prediction of type III secreted proteins

@nl

prefLabel

Sequence-based prediction of type III secreted proteins

@ast

Sequence-based prediction of type III secreted proteins

@en

Sequence-based prediction of type III secreted proteins

@nl

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Sequence-based prediction of type III secreted proteins

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Antti Niinikoski

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Frederick Kleine

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Patrick Tischler

http://www.w3.org/2001/XMLSchema#string

Sebastian Behrens

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Stefan Brandmaier

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P2860

Evolutionary origins of genomic repertoires in bacteria.

Genome Sequence of an Obligate Intracellular Pathogen of Humans: Chlamydia trachomatis

Genomewide identification of proteins secreted by the Hrp type III protein secretion system of Pseudomonas syringae pv. tomato DC3000

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

MUSCLE: multiple sequence alignment with high accuracy and high throughput

KEGG for linking genomes to life and the environment

STRING 7--recent developments in the integration and prediction of protein interactions

NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

An extensive repertoire of type III secretion effectors in Escherichia coli O157 and the role of lambdoid phages in their dissemination

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