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Automatic detection of conserved RNA structure elements in complete RNA virus genomes

Automatic detection of conserved RNA structure elements in complete RNA virus genomes

http://www.wikidata.org/entity/Q27473247

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Genome-wide analyses of Epstein-Barr virus reveal conserved RNA structures and a novel stable intronic sequence RNA ViennaRNA Package 2.0 cis-acting RNA signals in the NS5B C-terminal coding sequence of the hepatitis C virus genome Tfold: efficient in silico prediction of non-coding RNA secondary structures A cis-acting replication element in the sequence encoding the NS5B RNA-dependent RNA polymerase is required for hepatitis C virus RNA replication Cis-acting RNA elements in human and animal plus-strand RNA viruses Evidence of a novel RNA secondary structure in the coding region of HIV-1 pol gene A common variant in the 3'UTR of the GRIK4 glutamate receptor gene affects transcript abundance and protects against bipolar disorder The microRNAs of Caenorhabditis elegans Multiple sequence alignments of partially coding nucleic acid sequences.Structural constraints on RNA virus evolution Thermodynamic and phylogenetic prediction of RNA secondary structures in the coding region of hepatitis C virus Functional analysis of the tick-borne encephalitis virus cyclization elements indicates major differences between mosquito-borne and tick-borne flaviviruses The C-Terminal Hydrophobic Domain of Hepatitis C Virus RNA Polymerase NS5B Can Be Replaced with a Heterologous Domain of Poliovirus Protein 3A Solution structure of the HIV-1 frameshift inducing stem-loop RNA Vienna RNA secondary structure server From consensus structure prediction to RNA gene finding Molecular paleontology: a biochemical model of the ancestral ribosome Optimal alphabets for an RNA world Kissing-loop interaction in the 3' end of the hepatitis C virus genome essential for RNA replication Yeast telomerase RNA: a flexible scaffold for protein subunits.Multiple functions of mfa-1, a putative pheromone precursor gene of Neurospora crassa.Predicting RNA secondary structure by the comparative approach: how to select the homologous sequences.Sequence-structure relations of pseudoknot RNA.Prediction of common secondary structures of RNAs: a genetic algorithm approach.A predictive model for secondary RNA structure using graph theory and a neural network.Evolution of MIR159/319 microRNA genes and their post-transcriptional regulatory link to siRNA pathways.Effects of genome-wide copy number variation on expression in mammalian cells.Memory efficient folding algorithms for circular RNA secondary structures.Base composition and translational selection are insufficient to explain codon usage bias in plant viruses.Advances in RNA structure prediction from sequence: new tools for generating hypotheses about viral RNA structure-function relationships In silico modification of oseltamivir as neuraminidase inhibitor of influenza A virus subtype H1N1.Measuring the dynamic surface accessibility of RNA with the small paramagnetic molecule TEMPOL.An overlapping essential gene in the Potyviridae.Systems biology approach to integrative comparative genomics.Systematic analysis of enhancer and critical cis-acting RNA elements in the protein-encoding region of the hepatitis C virus genome.Global identification of conserved post-transcriptional regulatory programs in trypanosomatids Evidence of pervasive biologically functional secondary structures within the genomes of eukaryotic single-stranded DNA viruses.Hepatitis C viral protein translation: mechanisms and implications in developing antivirals.cis-Acting RNA elements in the hepatitis C virus RNA genome.

P2860

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P2860

Automatic detection of conserved RNA structure elements in complete RNA virus genomes

http://www.wikidata.org/entity/Q27473247

description

1998 nî lūn-bûn

@nan

1998 թուականի Օգոստոսին հրատարակուած գիտական յօդուած

@hyw

1998 թվականի օգոստոսին հրատարակված գիտական հոդված

@hy

1998年の論文

@ja

1998年論文

@yue

1998年論文

@zh-hant

1998年論文

@zh-hk

1998年論文

@zh-mo

1998年論文

@zh-tw

1998年论文

@wuu

name

Automatic detection of conserved RNA structure elements in complete RNA virus genomes

@ast

Automatic detection of conserved RNA structure elements in complete RNA virus genomes

@en

Automatic detection of conserved RNA structure elements in complete RNA virus genomes

@nl

type

label

Automatic detection of conserved RNA structure elements in complete RNA virus genomes

@ast

Automatic detection of conserved RNA structure elements in complete RNA virus genomes

@en

Automatic detection of conserved RNA structure elements in complete RNA virus genomes

@nl

prefLabel

Automatic detection of conserved RNA structure elements in complete RNA virus genomes

@ast

Automatic detection of conserved RNA structure elements in complete RNA virus genomes

@en

Automatic detection of conserved RNA structure elements in complete RNA virus genomes

@nl

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Nucleic Acids Research

P1476

Automatic detection of conserved RNA structure elements in complete RNA virus genomes

@en

P2093

I L Hofacker

http://www.w3.org/2001/XMLSchema#string

M A Huynen

http://www.w3.org/2001/XMLSchema#string

M Fekete

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P E Stolorz

http://www.w3.org/2001/XMLSchema#string

P F Stadler

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S Rauscher

http://www.w3.org/2001/XMLSchema#string

P2860

Evidence for the Existence of a Pseudoknot Structure at the 3‘ Terminus of the Flavivirus Genomic RNA †

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

Structural features in TAR RNA of human and simian immunodeficiency viruses: a phylogenetic analysis

Spontaneous and engineered deletions in the 3' noncoding region of tick-borne encephalitis virus: construction of highly attenuated mutants of a flavivirus.

Stability of a stem-loop involving the initiator AUG controls the efficiency of internal initiation of translation on hepatitis C virus RNA.

Secondary structure of the 3'-noncoding region of flavivirus genomes: comparative analysis of base pairing probabilities.

Structure of the 3' terminus of the hepatitis C virus genome

Identification of a highly conserved sequence element at the 3' terminus of hepatitis C virus genome RNA

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3825-36

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10.1093/NAR/26.16.3825

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P433

16

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26

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Christoph Flamm

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1998-08-15T00:00:00Z

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13598710

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9685502

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147758

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