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Yeast 5 – an expanded reconstruction of the Saccharomyces cerevisiae metabolic network

Yeast 5 – an expanded reconstruction of the Saccharomyces cerevisiae metabolic network

http://www.wikidata.org/entity/Q27499038

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Achieving Metabolic Flux Analysis for S. cerevisiae at a Genome-Scale: Challenges, Requirements, and Considerations Iron, glucose and intrinsic factors alter sphingolipid composition as yeast cells enter stationary phase.Pathway connectivity and signaling coordination in the yeast stress-activated signaling network.Quantification of Microbial Phenotypes Reconstruction and validation of a genome-scale metabolic model for the filamentous fungus Neurospora crassa using FARM A framework for application of metabolic modeling in yeast to predict the effects of nsSNV in human orthologs Computational analysis of reciprocal association of metabolism and epigenetics in the budding yeast: a genome-scale metabolic model (GSMM) approach Comparative Analysis of Yeast Metabolic Network Models Highlights Progress, Opportunities for Metabolic Reconstruction A community-driven global reconstruction of human metabolism.Thermochemical hydrolysis of macroalgae Ulva for biorefinery: Taguchi robust design method.BioMet Toolbox 2.0: genome-wide analysis of metabolism and omics data.Prediction of metabolic flux distribution from gene expression data based on the flux minimization principle.A robust and efficient method for estimating enzyme complex abundance and metabolic flux from expression data.E-Flux2 and SPOT: Validated Methods for Inferring Intracellular Metabolic Flux Distributions from Transcriptomic Data Broad metabolic sensitivity profiling of a prototrophic yeast deletion collection.The yeast deletion collection: a decade of functional genomics Improving metabolic flux predictions using absolute gene expression data.Mapping condition-dependent regulation of metabolism in yeast through genome-scale modeling.An analysis of a 'community-driven' reconstruction of the human metabolic network BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology.Inferring host gene subnetworks involved in viral replication.RobOKoD: microbial strain design for (over)production of target compounds.Optimization of lipid production with a genome-scale model of Yarrowia lipolytica.Integration and Validation of the Genome-Scale Metabolic Models of Pichia pastoris: A Comprehensive Update of Protein Glycosylation Pathways, Lipid and Energy Metabolism Sequence-based Network Completion Reveals the Integrality of Missing Reactions in Metabolic Networks Pathway-Consensus Approach to Metabolic Network Reconstruction for Pseudomonas putida KT2440 by Systematic Comparison of Published Models Prediction of metabolic fluxes from gene expression data with Huber penalty convex optimization function.Reconstruction and applications of consensus yeast metabolic network based on RNA sequencing.A model of yeast glycolysis based on a consistent kinetic characterisation of all its enzymes.An overview of bioinformatics methods for modeling biological pathways in yeast.Revising the Representation of Fatty Acid, Glycerolipid, and Glycerophospholipid Metabolism in the Consensus Model of Yeast Metabolism.Bridging the layers: towards integration of signal transduction, regulation and metabolism into mathematical models.A systems biology approach to optimising hosts for industrial protein production.Applications of genome-scale metabolic network model in metabolic engineering.Critical assessment of genome-scale metabolic networks: the need for a unified standard.Genome scale models of yeast: towards standardized evaluation and consistent omic integration.Effect of database drift on network topology and enrichment analyses: a case study for RegulonDB.An integrated text mining framework for metabolic interaction network reconstruction.A Caenorhabditis elegans Genome-Scale Metabolic Network Model.What mRNA Abundances Can Tell us about Metabolism

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P2860

Yeast 5 – an expanded reconstruction of the Saccharomyces cerevisiae metabolic network

http://www.wikidata.org/entity/Q27499038

description

2012 nî lūn-bûn

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2012 թուականի Յունիսին հրատարակուած գիտական յօդուած

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2012 թվականի հունիսին հրատարակված գիտական հոդված

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2012年の論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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2012年论文

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name

Yeast 5 – an expanded reconstruction of the Saccharomyces cerevisiae metabolic network

@ast

Yeast 5 – an expanded reconstruction of the Saccharomyces cerevisiae metabolic network

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Yeast 5 – an expanded reconstruction of the Saccharomyces cerevisiae metabolic network

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type

label

Yeast 5 – an expanded reconstruction of the Saccharomyces cerevisiae metabolic network

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Yeast 5 – an expanded reconstruction of the Saccharomyces cerevisiae metabolic network

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Yeast 5 – an expanded reconstruction of the Saccharomyces cerevisiae metabolic network

@nl

prefLabel

Yeast 5 – an expanded reconstruction of the Saccharomyces cerevisiae metabolic network

@ast

Yeast 5 – an expanded reconstruction of the Saccharomyces cerevisiae metabolic network

@en

Yeast 5 – an expanded reconstruction of the Saccharomyces cerevisiae metabolic network

@nl

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P1433

BMC Systems Biology

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Yeast 5 – an expanded reconstruction of the Saccharomyces cerevisiae metabolic network

@en

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Larry P Walker

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P2860

A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

Expansion of the BioCyc collection of pathway/genome databases to 160 genomes.

Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network

A protocol for generating a high-quality genome-scale metabolic reconstruction

KEGG for representation and analysis of molecular networks involving diseases and drugs

Global analysis of the yeast lipidome by quantitative shotgun mass spectrometry

ChEBI: a database and ontology for chemical entities of biological interest

Large-scale 13C-flux analysis reveals mechanistic principles of metabolic network robustness to null mutations in yeast

Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis

P2888

P304

55

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scholarly article

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620635

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10.1186/1752-0509-6-55

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1

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6

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Kieran Smallbone

Benjamin D Heavner

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2012-06-04T00:00:00Z

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225184138

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1012538800

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22663945

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applied mathematics

Saccharomyces cerevisiae

structural biology

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3413506

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