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Structural origins of adenine-tract bending

Structural origins of adenine-tract bending

http://www.wikidata.org/entity/Q27640492

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Non-B DB: a database of predicted non-B DNA-forming motifs in mammalian genomes Pre-organized structure of viral DNA at the binding-processing site of HIV-1 integrase DNA A-tract bending in three dimensions: Solving the dA4T4 vs. dT4A4 conundrum The role of SOS boxes in enteric bacteriocin regulation The intrinsic mechanics of B-DNA in solution characterized by NMR Direct observation of dipolar couplings between distant protons in weakly aligned nucleic acids Structure and axis curvature in two dA6 x dT6 DNA oligonucleotides: comparison of molecular dynamics simulations with results from crystallography and NMR spectroscopy.Construction of a genome-scale structural map at single-nucleotide resolution.G+C content dominates intrinsic nucleosome occupancy Analyzing DNA curvature and its impact on the ionic environment: application to molecular dynamics simulations of minicircles Insights into Watson-Crick/Hoogsteen breathing dynamics and damage repair from the solution structure and dynamic ensemble of DNA duplexes containing m1A.Changes in DNA bending induced by restricting nucleotide ring pucker studied by weak alignment NMR spectroscopy Genomic landscape of human, bat, and ex vivo DNA transposon integrations.A measure of bending in nucleic acids structures applied to A-tract DNA.Interference of intrinsic curvature of DNA by DNA-intercalating agents.Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. I. Research design and results on d(CpG) steps Intrinsic curvature in the VP1 gene of SV40: comparison of solution and gel results Gapped DNA and cyclization of short DNA fragments.Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. II: sequence context effects on the dynamical structures of the 10 unique dinucleotide steps.Predicting indirect readout effects in protein-DNA interactions.Effect of magnesium ions and temperature on the sequence-dependent curvature of DNA restriction fragments Flanking A·T basepairs destabilize the B(∗) conformation of DNA A-tracts.H-NS: a universal regulator for a dynamic genome.DNA codes for nanoscience.Determination of DNA minor groove width in distamycin-DNA complexes by solid-state NMR.Genomic approaches to DNA repair and mutagenesis.Electrostatic free energy landscapes for DNA helix bending.Spectroscopic and molecular dynamics evidence for a sequential mechanism for the A-to-B transition in DNA.Quantitative analysis of monovalent counterion binding to random-sequence, double-stranded DNA using the replacement ion method.Stability and kinetics of G-quadruplex structures DNA A-tracts are not curved in solutions containing high concentrations of monovalent cations.Electrophoresis of DNA in agarose gels, polyacrylamide gels and in free solution.Poly(dA:dT) tracts: major determinants of nucleosome organization.The unique structure of A-tracts and intrinsic DNA bending.Binding and catalytic contributions to site recognition by flp recombinase.SarT influences sarS expression in Staphylococcus aureus.DNA-binding domain of GCN4 induces bending of both the ATF/CREB and AP-1 binding sites of DNA.Centromere parC of plasmid R1 is curved.Magnitude and direction of DNA bending induced by screw-axis orientation: influence of sequence, mismatches and abasic sites.Comparative analysis of inosine-substituted duplex DNA by circular dichroism and X-ray crystallography.

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Structural origins of adenine-tract bending

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2003 nî lūn-bûn

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2003 թուականի Մարտին հրատարակուած գիտական յօդուած

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Structural origins of adenine-tract bending

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Structural origins of adenine-tract bending

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Structural origins of adenine-tract bending

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Structural origins of adenine-tract bending

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Proceedings of the National Academy of Sciences of the United States of America

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Structural origins of adenine-tract bending

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Andrej Barbic

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Daniel P Zimmer

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Donald M Crothers

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P2860

Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

Solution structure of an A-tract DNA bend

DNA bending by an adenine-thymine tract and its role in gene regulation

A bifurcated hydrogen-bonded conformation in the d(A.T) base pairs of the DNA dodecamer d(CGCAAATTTGCG) and its complex with distamycin

The structure of an oligo(dA).oligo(dT) tract and its biological implications

Use of dipolar 1H-15N and 1H-13C couplings in the structure determination of magnetically oriented macromolecules in solution

The structure of an essential splicing element: stem loop IIa from yeast U2 snRNA

Backbone 1H and 15N resonance assignments of the N-terminal SH3 domain of drk in folded and unfolded states using enhanced-sensitivity pulsed field gradient NMR techniques

Calibration of DNA curvature and a unified description of sequence-directed bending.

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