Crystal Structure of Bacillus stearothermophilus UvrA Provides Insight into ATP-Modulated Dimerization, UvrB Interaction, and DNA Binding - Wikidata - wikimedia - TriplyDB

Crystal Structure of Bacillus stearothermophilus UvrA Provides Insight into ATP-Modulated Dimerization, UvrB Interaction, and DNA Binding

Crystal Structure of Bacillus stearothermophilus UvrA Provides Insight into ATP-Modulated Dimerization, UvrB Interaction, and DNA Binding

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Molecular mechanisms of the whole DNA repair system: a comparison of bacterial and eukaryotic systems Structure, function, and evolution of bacterial ATP-binding cassette systems Investigation of bacterial nucleotide excision repair using single-molecule techniques.A Structural Model for the Damage-sensing Complex in Bacterial Nucleotide Excision Repair An N-terminal clamp restrains the motor domains of the bacterial transcription-repair coupling factor Mfd Structure of UvrA nucleotide excision repair protein in complex with modified DNA The biological and structural characterization of Mycobacterium tuberculosis UvrA provides novel insights into its mechanism of action Structure and mechanism of the UvrA-UvrB DNA damage sensor Nucleotide excision repair (NER) machinery recruitment by the transcription-repair coupling factor involves unmasking of a conserved intramolecular interface A Decade of Biochemical and Structural Studies of the DNA Repair Machinery of Deinococcus radiodurans: Major Findings, Functional and Mechanistic Insight and Challenges Exploring damage recognition models in prokaryotic nucleotide excision repair with a benzo[a]pyrene-derived lesion in UvrB Collaborative dynamic DNA scanning by nucleotide excision repair proteins investigated by single- molecule imaging of quantum-dot-labeled proteins.DNA wrapping is required for DNA damage recognition in the Escherichia coli DNA nucleotide excision repair pathway.The replication initiator of the cholera pathogen's second chromosome shows structural similarity to plasmid initiators.Controlled degradation by ClpXP protease tunes the levels of the excision repair protein UvrA to the extent of DNA damage.Solution NMR studies of periplasmic binding proteins and their interaction partners XPB and XPD helicases in TFIIH orchestrate DNA duplex opening and damage verification to coordinate repair with transcription and cell cycle via CAK kinase.Alkyltransferase-like proteins: molecular switches between DNA repair pathways.A Computational Approach towards the Understanding of Plasmodium falciparum Multidrug Resistance Protein 1 Probing for DNA damage with β-hairpins: similarities in incision efficiencies of bulky DNA adducts by prokaryotic and human nucleotide excision repair systems in vitro Surviving the sun: repair and bypass of DNA UV lesions.Dissociation Dynamics of XPC-RAD23B from Damaged DNA Is a Determining Factor of NER Efficiency.Correlation of Thermal Stability and Structural Distortion of DNA Interstrand Cross-Links Produced from Oxidized Abasic Sites with Their Selective Formation and Repair.Prokaryotic nucleotide excision repair.Single-molecule analysis reveals two separate DNA-binding domains in the Escherichia coli UvrA dimer.Structural frameworks for considering microbial protein- and nucleic acid-dependent motor ATPases.Exploratory Investigation of Bacteroides fragilis Transcriptional Response during In vitro Exposure to Subinhibitory Concentration of Metronidazole.A biochemically active MCM-like helicase in Bacillus cereus A tale of two cities: A tribute to Aziz Sancar's Nobel Prize in Chemistry for his molecular characterization of NER.Dynamics of lesion processing by bacterial nucleotide excision repair proteins Natural history of ABC systems: not only transporters.Interplay of DNA repair with transcription: from structures to mechanisms.Prioritizing the repair of DNA damage that is encountered by RNA polymerase.Invited review: Architectures and mechanisms of ATP binding cassette proteins.Regulation and rate enhancement during transcription-coupled DNA repair.Small-angle X-ray scattering reveals architecture and A₂B₂ stoichiometry of the UvrA-UvrB DNA damage sensor.Synthesis, structure, and biological evaluation of a platinum-carbazole conjugate.Mycobacterium tuberculosis UvrB forms dimers in solution and interacts with UvrA in the absence of ligands.ATP-dependent conformational change in ABC-ATPase RecF serves as a switch in DNA repair.Novel Sequence Features of DNA Repair Genes/Proteins from Deinococcus Species Implicated in Protection from Oxidatively Generated Damage.

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Crystal Structure of Bacillus stearothermophilus UvrA Provides Insight into ATP-Modulated Dimerization, UvrB Interaction, and DNA Binding

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Crystal Structure of Bacillus ...... B Interaction, and DNA Binding

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Crystal Structure of Bacillus ...... B Interaction, and DNA Binding

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Crystal Structure of Bacillus ...... B Interaction, and DNA Binding

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Crystal Structure of Bacillus ...... B Interaction, and DNA Binding

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Crystal Structure of Bacillus ...... B Interaction, and DNA Binding

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Crystal Structure of Bacillus ...... B Interaction, and DNA Binding

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Crystal Structure of Bacillus ...... B Interaction, and DNA Binding

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Crystal Structure of Bacillus ...... B Interaction, and DNA Binding

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Crystal Structure of Bacillus ...... B Interaction, and DNA Binding

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Danaya Pakotiprapha

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David Jeruzalmi

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

Structure of the ABC ATPase domain of human TAP1, the transporter associated with antigen processing

Electrostatics of nanosystems: application to microtubules and the ribosome

Amino acid substitution matrices from protein blocks

Improved methods for building protein models in electron density maps and the location of errors in these models

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

Crystal structure of the DNA nucleotide excision repair enzyme UvrB from Thermus thermophilus

Crystal structure of Thermus thermophilus HB8 UvrB protein, a key enzyme of nucleotide excision repair

Crystal structure of UvrB, a DNA helicase adapted for nucleotide excision repair.

Crystal structure of Escherichia coli UvrB C-terminal domain, and a model for UvrB-uvrC interaction

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crystal structure

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