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Obligatory steps in protein folding and the conformational diversity of the transition state

Obligatory steps in protein folding and the conformational diversity of the transition state

http://www.wikidata.org/entity/Q27765097

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Structure-function-folding relationship in a WW domain Evaluating beta-turn mimics as beta-sheet folding nucleators From snapshot to movie: phi analysis of protein folding transition states taken one step further Polymer uncrossing and knotting in protein folding, and their role in minimal folding pathways Thermodynamic and structural characterization of Asn and Ala residues in the disallowed II′ region of the Ramachandran plot Using flexible loop mimetics to extend -value analysis to secondary structure interactions Unspecific hydrophobic stabilization of folding transition states High-resolution structure of an α-spectrin SH3-domain mutant with a redesigned hydrophobic core Differences in the folding transition state of ubiquitin indicated by phi and psi analyses Insights into protein aggregation by NMR characterization of insoluble SH3 mutants solubilized in salt-free water Local structural differences in homologous proteins: specificities in different SCOP classes Mapping the structure of amyloid nucleation precursors by protein engineering kinetic analysis.Alternatingly twisted β-hairpins and nonglycine residues in the disallowed II' region of the Ramachandran plot.Interfacial water molecules in SH3 interactions: Getting the full picture on polyproline recognition by protein-protein interaction domains.The redundancy of NMR restraints can be used to accelerate the unfolding behavior of an SH3 domain during molecular dynamics simulations Domain cooperativity in multidomain proteins: what can we learn from molecular alignment in anisotropic media?Computational model for protein unfolding simulation.Constraining local structure can speed up folding by promoting structural polarization of the folding pathway Environmental conditions affect the kinetics of nucleation of amyloid fibrils and determine their morphology.A single mutation in an SH3 domain increases amyloid aggregation by accelerating nucleation, but not by destabilizing thermodynamically the native state.Structural basis of Robo proline-rich motif recognition by the srGAP1 Src homology 3 domain in the Slit-Robo signaling pathway.Sequence of events in folding mechanism: beyond the Gō model Sparsely populated folding intermediates of the Fyn SH3 domain: matching native-centric essential dynamics and experiment Transition states for protein folding have native topologies despite high structural variability.Detection and characterization of partially unfolded oligomers of the SH3 domain of alpha-spectrin.A binding event converted into a folding event.Structurally homologous all beta-barrel proteins adopt different mechanisms of folding Folding specificity induced by loop stiffness Nucleotide-induced conformations in the neck region of dimeric kinesin.Structural cooperativity in the SH3 domain studied by site-directed mutagenesis and amide hydrogen exchange.Direct molecular dynamics observation of protein folding transition state ensemble Microscopic evidence for a minus-end-directed power stroke in the kinesin motor ncd.The temperature dependence of the hydrogen exchange in the SH3 domain of alpha-spectrin.pH dependence of the hydrogen exchange in the SH3 domain of alpha-spectrin.Protein folding mediated by solvation: water expulsion and formation of the hydrophobic core occur after the structural collapse Clusters in alpha/beta barrel proteins: implications for protein structure, function, and folding: a graph theoretical approach.The design of a hyperstable mutant of the Abp1p SH3 domain by sequence alignment analysis The identification of conserved interactions within the SH3 domain by alignment of sequences and structures.Mechanism of protein folding.Long-range order in the src SH3 folding transition state

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Obligatory steps in protein folding and the conformational diversity of the transition state

http://www.wikidata.org/entity/Q27765097

description

1998 nî lūn-bûn

@nan

1998 թուականի Օգոստոսին հրատարակուած գիտական յօդուած

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1998 թվականի օգոստոսին հրատարակված գիտական հոդված

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1998年の論文

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Serrano L

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P2860

Different folding transition states may result in the same native structure

Improved methods for building protein models in electron density maps and the location of errors in these models

Crystal structure of a Src-homology 3 (SH3) domain

Engineering alternative beta-turn types in staphylococcal nuclease

Amino-acid substitutions in a surface turn modulate protein stability

1H and 15N NMR assignment and solution structure of the SH3 domain of spectrin: comparison of unrefined and refined structure sets with the crystal structure

Rapid and efficient site-specific mutagenesis without phenotypic selection

Crystallographic R factor refinement by molecular dynamics

Calculation of protein extinction coefficients from amino acid sequence data

From Levinthal to pathways to funnels

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10.1038/1418

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Jose C Martinez

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1998-08-01T00:00:00Z

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13584916

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9699637

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protein folding