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OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

http://www.wikidata.org/entity/Q27860860

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Getting started in gene orthology and functional analysis Plant-symbiotic fungi as chemical engineers: multi-genome analysis of the clavicipitaceae reveals dynamics of alkaloid loci Phytomonas: trypanosomatids adapted to plant environments Comparative genomics of the apicomplexan parasites Toxoplasma gondii and Neospora caninum: Coccidia differing in host range and transmission strategy Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species Analysis of the Basidiomycete Coprinopsis cinerea reveals conservation of the core meiotic expression program over half a billion years of evolution Resolving difficult phylogenetic questions: why more sequences are not enough Ancient genomic architecture for mammalian olfactory receptor clusters Complete genome sequence of DSM 30083(T), the type strain (U5/41(T)) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy OrthoMaM: a database of orthologous genomic markers for placental mammal phylogenetics The draft genome of sweet orange (Citrus sinensis)Cultivation and complete genome sequencing of Gloeobacter kilaueensis sp. nov., from a lava cave in Kīlauea Caldera, Hawai'i Genomic and secretomic analyses reveal unique features of the lignocellulolytic enzyme system of Penicillium decumbens.Gene repertoire evolution of Streptococcus pyogenes inferred from phylogenomic analysis with Streptococcus canis and Streptococcus dysgalactiae Codivergence of mycoviruses with their hosts The human-bacterial pathogen protein interaction networks of Bacillus anthracis, Francisella tularensis, and Yersinia pestis Nannochloropsis genomes reveal evolution of microalgal oleaginous traits The genome of Spironucleus salmonicida highlights a fish pathogen adapted to fluctuating environments The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle Gene gain and loss during evolution of obligate parasitism in the white rust pathogen of Arabidopsis thaliana OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties Are 100 enough? Inferring acanthomorph teleost phylogeny using Anchored Hybrid Enrichment Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pest Premetazoan genome evolution and the regulation of cell differentiation in the choanoflagellate Salpingoeca rosetta Iterative orthology prediction uncovers new mitochondrial proteins and identifies C12orf62 as the human ortholog of COX14, a protein involved in the assembly of cytochrome c oxidase Update on genome completion and annotations: Protein Information Resource Genomes-based phylogeny of the genus Xanthomonas e-Fungi: a data resource for comparative analysis of fungal genomes Genome and transcriptome sequencing identifies breeding targets in the orphan crop tef (Eragrostis tef)The genome of Pelobacter carbinolicus reveals surprising metabolic capabilities and physiological features Comparative genomics of the classical Bordetella subspecies: the evolution and exchange of virulence-associated diversity amongst closely related pathogens A genome-wide study of two-component signal transduction systems in eight newly sequenced mutans streptococci strains The genome of Geobacter bemidjiensis, exemplar for the subsurface clade of Geobacter species that predominate in Fe(III)-reducing subsurface environments Evolution of electron transfer out of the cell: comparative genomics of six Geobacter genomes Drug target prediction and prioritization: using orthology to predict essentiality in parasite genomes Databases of homologous gene families for comparative genomics The genome sequence of Methanohalophilus mahii SLP(T) reveals differences in the energy metabolism among members of the Methanosarcinaceae inhabiting freshwater and saline environments Vaxign: the first web-based vaccine design program for reverse vaccinology and applications for vaccine development Defining bacterial species in the genomic era: insights from the genus Acinetobacter

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P2860

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

http://www.wikidata.org/entity/Q27860860

description

2003 nî lūn-bûn

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2003 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած

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2003 թվականի սեպտեմբերին հրատարակված գիտական հոդված

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2003年の論文

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2003年論文

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2003年論文

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2003年論文

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2003年論文

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2003年論文

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OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

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OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

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OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

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OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

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OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

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OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

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OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

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OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

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OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

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Genome Research

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OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

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Christian J Stoeckert

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Li Li

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P2860

Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii

Genome sequence of the human malaria parasite Plasmodium falciparum

Gene ontology: tool for the unification of biology

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

The COG database: new developments in phylogenetic classification of proteins from complete genomes

Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs)

A genomic perspective on protein families

The COG database: a tool for genome-scale analysis of protein functions and evolution

An efficient algorithm for large-scale detection of protein families

Gene families: the taxonomy of protein paralogs and chimeras

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2178-89

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189399

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10.1101/GR.1224503

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12952885

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403725

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