Energy functions that discriminate X-ray and near native folds from well-constructed decoys
about
The FEATURE framework for protein function annotation: modeling new functions, improving performance, and extending to novel applicationsSampling realistic protein conformations using local structural biasA composite score for predicting errors in protein structure modelsPredicting continuous local structure and the effect of its substitution for secondary structure in fragment-free protein structure predictionAmino acid empirical contact energy definitions for fold recognition in the space of contact mapsA protein folding potential that places the native states of a large number of proteins near a local minimum.Improved protein structure selection using decoy-dependent discriminatory functionsSampling and scoring: a marriage made in heavenA self-consistent knowledge-based approach to protein designScientific benchmarks for guiding macromolecular energy function improvementA new hydrogen-bonding potential for the design of protein-RNA interactions predicts specific contacts and discriminates decoysStatistical potential for assessment and prediction of protein structuresRecognizing misfolded and distorted protein structures by the assumption-based similarity score.Selecting near-native conformations in homology modeling: the role of molecular mechanics and solvation termsDecoys 'R' Us: a database of incorrect conformations to improve protein structure predictionFree energy determinants of tertiary structure and the evaluation of protein models.Lattice protein folding with two and four-body statistical potentials.A distance-dependent atomic knowledge-based potential for improved protein structure selection.TOUCHSTONE: an ab initio protein structure prediction method that uses threading-based tertiary restraints.A physical approach to protein structure predictionImproved recognition of native-like protein structures using a family of designed sequencesStatistical potentials for fold assessment.Contact order and ab initio protein structure predictionDesignability of alpha-helical proteinsEvaluating CASP4 predictions with physical energy functions.Can correct protein models be identified?A novel approach to decoy set generation: designing a physical energy function having local minima with native structure characteristicsDatabase-derived potentials dependent on protein size for in silico folding and design.Underlying hydrophobic sequence periodicity of protein tertiary structure.Decoys for dockingProtein structure evaluation using an all-atom energy based empirical scoring function.A new generation of statistical potentials for proteins.Delaunay-based nonlocal interactions are sufficient and accurate in protein fold recognition.Novel knowledge-based mean force potential at the profile levelA free-rotating and self-avoiding chain model for deriving statistical potentials based on protein structuresProtein structure prediction by all-atom free-energy refinement.Nonbonded terms extrapolated from nonlocal knowledge-based energy functions improve error detection in near-native protein structure models.Towards the high-resolution protein structure prediction. Fast refinement of reduced models with all-atom force field.Benchmarking consensus model quality assessment for protein fold recognition.Fold assessment for comparative protein structure modeling.
P2860
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P2860
Energy functions that discriminate X-ray and near native folds from well-constructed decoys
description
1996 nî lūn-bûn
@nan
1996 թուականի Մայիսին հրատարակուած գիտական յօդուած
@hyw
1996 թվականի մայիսին հրատարակված գիտական հոդված
@hy
1996年の論文
@ja
1996年論文
@yue
1996年論文
@zh-hant
1996年論文
@zh-hk
1996年論文
@zh-mo
1996年論文
@zh-tw
1996年论文
@wuu
name
Energy functions that discrimi ...... s from well-constructed decoys
@ast
Energy functions that discrimi ...... s from well-constructed decoys
@en
Energy functions that discrimi ...... s from well-constructed decoys
@nl
type
label
Energy functions that discrimi ...... s from well-constructed decoys
@ast
Energy functions that discrimi ...... s from well-constructed decoys
@en
Energy functions that discrimi ...... s from well-constructed decoys
@nl
prefLabel
Energy functions that discrimi ...... s from well-constructed decoys
@ast
Energy functions that discrimi ...... s from well-constructed decoys
@en
Energy functions that discrimi ...... s from well-constructed decoys
@nl
P356
P1476
Energy functions that discrimi ...... s from well-constructed decoys
@en
P2093
P304
P356
10.1006/JMBI.1996.0256
P407
P577
1996-05-03T00:00:00Z