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The EBI RDF platform: linked open data for the life sciences

The EBI RDF platform: linked open data for the life sciences

http://www.wikidata.org/entity/Q28305672

about

PubChemRDF: towards the semantic annotation of PubChem compound and substance databases QMachine: commodity supercomputing in web browsers Reporting biological assay screening results for maximum impact Ontology application and use at the ENCODE DCC Implementation of linked data in the life sciences at BioHackathon 2011 Managing, analysing, and integrating big data in medical bioinformatics: open problems and future perspectives The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation kpath: integration of metabolic pathway linked data PubChem Substance and Compound databases The health care and life sciences community profile for dataset descriptions Colil: a database and search service for citation contexts in the life sciences domain RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants SSBD: a database of quantitative data of spatiotemporal dynamics of biological phenomena DisGeNET-RDF: harnessing the innovative power of the Semantic Web to explore the genetic basis of diseases Using AberOWL for fast and scalable reasoning over BioPortal ontologies Transforming the Medical Subject Headings into Linked Data: Creating the Authorized Version of MeSH in RDF Generation of open biomedical datasets through ontology-driven transformation and integration processes Linking rare and common disease: mapping clinical disease-phenotypes to ontologies in therapeutic target validation The European Bioinformatics Institute in 2016: Data growth and integration SEEK: a systems biology data and model management platform An automated real-time integration and interoperability framework for bioinformatics Enhanced reproducibility of SADI web service workflows with Galaxy and Docker SPARQL-enabled identifier conversion with Identifiers.org ChEMBL web services: streamlining access to drug discovery data and utilities BioModels linked dataset Aber-OWL: a framework for ontology-based data access in biology BioModels: ten-year anniversary GlycoRDF: an ontology to standardize glycomics data in RDF Computational approaches for pharmacovigilance signal detection: toward integrated and semantically-enriched frameworks BioModels: Content, Features, Functionality, and Use Combining computational models, semantic annotations and simulation experiments in a graph database Integrated network analysis and effective tools in plant systems biology.Big data and other challenges in the quest for orthologs Executing SADI services in Galaxy TogoTable: cross-database annotation system using the Resource Description Framework (RDF) data model Protein Bioinformatics Databases and Resources.Towards a systems approach for chronic diseases, based on health state modeling.Knowledge Representation and Management: a Linked Data Perspective.Open PHACTS computational protocols for in silico target validation of cellular phenotypic screens: knowing the knowns.

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P2860

The EBI RDF platform: linked open data for the life sciences

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2014 nî lūn-bûn

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2014 թուականի Մայիսին հրատարակուած գիտական յօդուած

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2014 թվականի մայիսին հրատարակված գիտական հոդված

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2014年の論文

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2014年論文

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2014年論文

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2014年論文

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2014年論文

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2014年論文

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2014年论文

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The EBI RDF platform: linked open data for the life sciences

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Helen Parkinson

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Marco Brandizi

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Maria Martin

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Mark Davies

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P2860

Modeling sample variables with an Experimental Factor Ontology

BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models

The BioSample Database (BioSD) at the European Bioinformatics Institute

Identifiers.org and MIRIAM Registry: community resources to provide persistent identification

Bio2RDF: Towards a mashup to build bioinformatics knowledge systems

The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies

ChEMBL: a large-scale bioactivity database for drug discovery

Reactome knowledgebase of human biological pathways and processes

Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments

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1338-9

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scholarly article

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1054065

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10.1093/BIOINFORMATICS/BTT765

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P433

9

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30

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Nicolas Le Novère

Sarala M. Wimalaratne

Nicole Redaschi

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2014-05-01T00:00:00Z

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259699393

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24413672

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computational mathematics

Linked Open Data

Resource Description Framework

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3998127

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