about
The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration'Omics data sharingA simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TABArrayExpress--a public repository for microarray gene expression data at the EBIData standards can boost metabolomics research, and if there is a will, there is a waySurvey-based naming conventions for use in OBO Foundry ontology developmentMetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-dataThe FAIR Guiding Principles for scientific data management and stewardshipBioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domainsToward interoperable bioscience dataModeling biomedical experimental processes with OBITowards BioDBcore: a community-defined information specification for biological databasesThe Ontology for Biomedical InvestigationsCOordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data accessFrom Peer-Reviewed to Peer-Reproduced in Scholarly Publishing: The Complementary Roles of Data Models and Workflows in BioinformaticsMeeting report: advancing practical applications of biodiversity ontologieslinkedISA: semantic representation of ISA-Tab experimental metadataModeling a microbial community and biodiversity assay with OBO Foundry ontologies: the interoperability gains of a modular approachThe MetaboLights repository: curation challenges in metabolomicsOn the evolving portfolio of community-standards and data sharing policies: turning challenges into new opportunitiesThe Metadata Coverage Index (MCI): A standardized metric for quantifying database metadata richnessMetaboLights: towards a new COSMOS of metabolomics data managementSharing and archiving nucleic acid structure mapping dataMeeting Report from the Second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshopMeeting Report: BioSharing at ISMB 2010Towards BioDBcore: a community-defined information specification for biological databasesISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community levelOwner controlled data exchange in nutrigenomic collaborations: the NuGO information networkThe use of concept maps during knowledge elicitation in ontology development processes--the nutrigenomics use caseEnsMart: a generic system for fast and flexible access to biological dataIdentifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science dataPromoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI projectChallenges of molecular nutrition research 6: the nutritional phenotype database to store, share and evaluate nutritional systems biology studiesMetaboLights: An Open-Access Database Repository for Metabolomics Data.EBI metagenomics--a new resource for the analysis and archiving of metagenomic data.The Stem Cell Commons: an exemplar for data integration in the biomedical domain driven by the ISA framework.The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again.ArrayExpress: a public database of gene expression data at EBI.The center for expanded data annotation and retrieval.Chemical effects in biological systems--data dictionary (CEBS-DD): a compendium of terms for the capture and integration of biological study design description, conventional phenotypes, and 'omics data.
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Philippe Rocca-Serra
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2000-01-01T00:00:00Z