Computational identification of diverse mechanisms underlying transcription factor-DNA occupancy
about
Homotypic clusters of transcription factor binding sites: A model system for understanding the physical mechanics of gene expressionIncorporating chromatin accessibility data into sequence-to-expression modelingIntegrating motif, DNA accessibility and gene expression data to build regulatory maps in an organismInferring condition-specific targets of human TF-TF complexes using ChIP-seq data.Absence of a simple code: how transcription factors read the genomeOptimization of transcription factor binding map accuracy utilizing knockout-mouse models.Estimating binding properties of transcription factors from genome-wide binding profiles.Integrative analysis of public ChIP-seq experiments reveals a complex multi-cell regulatory landscape.Understanding DNA-binding specificity by bacteria hybrid selection.Differential Nucleosome Occupancies across Oct4-Sox2 Binding Sites in Murine Embryonic Stem Cells.Contribution of Sequence Motif, Chromatin State, and DNA Structure Features to Predictive Models of Transcription Factor Binding in Yeast.The Role of Genome Accessibility in Transcription Factor Binding in Bacteria.A Systematic Ensemble Approach to Thermodynamic Modeling of Gene Expression from Sequence Data.Contextual Refinement of Regulatory Targets Reveals Effects on Breast Cancer Prognosis of the RegulomeSimulations of enhancer evolution provide mechanistic insights into gene regulation.Quantitative modeling of gene expression using DNA shape features of binding sites.An improved predictive recognition model for Cys(2)-His(2) zinc finger proteins.Cis-regulatory elements and human evolutionPhysical constraints determine the logic of bacterial promoter architectures.Sex combs reduced (Scr) regulatory region of Drosophila revisited.FastMotif: spectral sequence motif discovery.Uncoupling evolutionary changes in DNA sequence, transcription factor occupancy and enhancer activityRecruitment and delivery of the fission yeast Rst2 transcription factor via a local genome structure counteracts repression by Tup1-family corepressors.Hill function-based models of transcriptional switches: impact of specific, nonspecific, functional and nonfunctional binding.
P2860
Q27026122-23F3F88A-34D2-41DF-A7CF-3F6EC3DC455CQ30908787-1E876830-4216-473D-B6CC-ED77D4D44A6CQ30912655-CCAACDD3-0592-49DA-83A2-D2FA31DE6D12Q31153687-27633AE2-D4F9-4C57-8828-DD7791BE65B9Q34111752-E645B290-EEAE-48AD-AF9F-AE00A830F0E0Q34579722-AE53CA44-8576-4DE7-9638-49B2BEDB8C2DQ34883141-D58B5BA6-9949-4693-B9EF-BE5FD47F1A37Q35130969-BA9044EA-67CB-4BA7-A71A-B2E7AC3D708EQ35533816-54A11A1F-F997-43F7-B3E5-A452BC7CDF75Q35620500-8E4A537C-50DB-478C-8ED2-F6DCCB7920ADQ35751160-AE973E8D-DFF5-406F-9425-83474FB3C03BQ35996823-0A89F5C6-3B04-451F-A7D8-55DED2214D9CQ36005275-A361B90B-F73A-4C11-BDA7-3575E942AAC2Q36253768-2513A90D-C799-4EEB-99FF-39D431E7CED6Q37428413-6F24D40B-28E2-4EB9-9BBB-FBE8E42F7804Q37623767-C8C88427-1367-40CC-84EF-7427277D1206Q37734422-4923152D-1393-4D90-A856-6BD9EB19BC45Q38248919-DF8A2AE7-210F-4484-B100-B735A0CFA857Q38735778-5591F21E-8AE7-48DD-9434-5594C70E756BQ38884770-2F541D30-4DA5-4A56-A415-1F0847544505Q41051812-BFDC316C-3A7D-444F-850B-3755D27B1FBEQ41329937-8CA73CDF-B048-4A6D-B791-77D99188FCF3Q47651189-8BF5F04A-9F8B-4E44-A2CB-2D58377B44FEQ50670964-CC39C3AB-3605-455A-8152-F176CC28E8CF
P2860
Computational identification of diverse mechanisms underlying transcription factor-DNA occupancy
description
2013 nî lūn-bûn
@nan
2013 թուականին հրատարակուած գիտական յօդուած
@hyw
2013 թվականին հրատարակված գիտական հոդված
@hy
2013年の論文
@ja
2013年論文
@yue
2013年論文
@zh-hant
2013年論文
@zh-hk
2013年論文
@zh-mo
2013年論文
@zh-tw
2013年论文
@wuu
name
Computational identification o ...... scription factor-DNA occupancy
@ast
Computational identification o ...... scription factor-DNA occupancy
@en
Computational identification o ...... scription factor-DNA occupancy
@nl
type
label
Computational identification o ...... scription factor-DNA occupancy
@ast
Computational identification o ...... scription factor-DNA occupancy
@en
Computational identification o ...... scription factor-DNA occupancy
@nl
prefLabel
Computational identification o ...... scription factor-DNA occupancy
@ast
Computational identification o ...... scription factor-DNA occupancy
@en
Computational identification o ...... scription factor-DNA occupancy
@nl
P2093
P2860
P3181
P1433
P1476
Computational identification o ...... scription factor-DNA occupancy
@en
P2093
Charles Blatti
Hannah Pham
Michael H Brodsky
Qiong Cheng
Saurabh Sinha
Scot A Wolfe
Susan E Celniker
P2860
P304
P3181
P356
10.1371/JOURNAL.PGEN.1003571
P407
P577
2013-01-01T00:00:00Z