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An expanded evaluation of protein function prediction methods shows an improvement in accuracy

An expanded evaluation of protein function prediction methods shows an improvement in accuracy

http://www.wikidata.org/entity/Q28596092

about

CATH: an expanded resource to predict protein function through structure and sequence.ASAP: a machine learning framework for local protein properties A three-way approach for protein function classification NaviGO: interactive tool for visualization and functional similarity and coherence analysis with gene ontology.COFACTOR: improved protein function prediction by combining structure, sequence and protein-protein interaction information.Resequencing and annotation of the Nostoc punctiforme ATTC 29133 genome: facilitating biofuel and high-value chemical production.NoGOA: predicting noisy GO annotations using evidences and sparse representation.Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper.Using PFP and ESG Protein Function Prediction Web Servers.Community-Wide Evaluation of Computational Function Prediction.Extensive complementarity between gene function prediction methods.An overview of comparative modelling and resources dedicated to large-scale modelling of genome sequences.Unsupervised Extraction of Stable Expression Signatures from Public Compendia with an Ensemble of Neural Networks.Systems approaches in osteoarthritis: Identifying routes to novel diagnostic and therapeutic strategies The Bologna Annotation Resource (BAR 3.0): improving protein functional annotation.Protein function in precision medicine: deep understanding with machine learning.CATH-Gene3D: Generation of the Resource and Its Use in Obtaining Structural and Functional Annotations for Protein Sequences.Protein Function Prediction Using Deep Restricted Boltzmann Machines.Structural and Functional View of Polypharmacology.Prediction of Human Phenotype Ontology terms by means of hierarchical ensemble methods.Large-scale automated function prediction of protein sequences and an experimental case study validation on PTEN transcript variants.Analysis of temporal transcription expression profiles reveal links between protein function and developmental stages of Drosophila melanogaster.The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces.Constructing Genetic Networks using Biomedical Literature and Rare Event Classification.Gene3D: Extensive prediction of globular domains in proteins.ADAGE signature analysis: differential expression analysis with data-defined gene sets.Assessing the Performances of Protein Function Prediction Algorithms from the Perspectives of Identification Accuracy and False Discovery Rate.A Bayesian approach for estimating protein-protein interactions by integrating structural and non-structural biological data.Ensemble gene function prediction database reveals genes important for complex I formation in Arabidopsis thaliana.pBRIT: Gene Prioritization by Correlating Functional and Phenotypic Annotations Through Integrative Data Fusion.PANDA: Protein function prediction using domain architecture and affinity propagation.New computational approaches to understanding molecular protein function.MetaGO: Predicting Gene Ontology of Non-homologous Proteins Through Low-Resolution Protein Structure Prediction and Protein-Protein Network Mapping.GROOLS: reactive graph reasoning for genome annotation through biological processes.Archetypal transcriptional blocks underpin yeast gene regulation in response to changes in growth conditions.Predicting human protein function with multi-task deep neural networks.PrESOgenesis: A two-layer multi-label predictor for identifying fertility-related proteins using support vector machine and pseudo amino acid composition approach.Enumerating consistent sub-graphs of directed acyclic graphs: an insight into biomedical ontologies.HFSP: high speed homology-driven function annotation of proteins.PANNZER2: a rapid functional annotation web server.

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An expanded evaluation of protein function prediction methods shows an improvement in accuracy

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2016 nî lūn-bûn

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2016 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած

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2016 թվականի սեպտեմբերին հրատարակված գիտական հոդված

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2016年の論文

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2016年論文

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2016年論文

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2016年論文

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2016年論文

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2016年論文

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2016年论文

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Evolutionary divergence and functions of the ADAM and ADAMTS gene families

Gene ontology: tool for the unification of biology

Identification, characterization, and intracellular processing of ADAM-TS12, a novel human disintegrin with a complex structural organization involving multiple thrombospondin-1 repeats

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

The Universal Protein Resource (UniProt)

A large-scale evaluation of computational protein function prediction

Characterizing the state of the art in the computational assignment of gene function: lessons from the first critical assessment of functional annotation (CAFA)

ADAM, a widely distributed and developmentally regulated gene family encoding membrane proteins with a disintegrin and metalloprotease domain

The impact of incomplete knowledge on the evaluation of protein function prediction: a structured-output learning perspective

The human phenotype ontology.

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