Genome-wide transcriptional response of Trichoderma reesei to lignocellulose using RNA sequencing and comparison with Aspergillus niger - Wikidata - wikimedia - TriplyDB

Genome-wide transcriptional response of Trichoderma reesei to lignocellulose using RNA sequencing and comparison with Aspergillus niger

Genome-wide transcriptional response of Trichoderma reesei to lignocellulose using RNA sequencing and comparison with Aspergillus niger

http://www.wikidata.org/entity/Q28681610

about

Cellulases and beyond: the first 70 years of the enzyme producer Trichoderma reesei Recent Developments in Using Advanced Sequencing Technologies for the Genomic Studies of Lignin and Cellulose Degrading Microorganisms Identification and functional characterization of novel xylose transporters from the cell factories Aspergillus niger and Trichoderma reesei Identification and characterization of putative xylose and cellobiose transporters in Aspergillus nidulans A transcriptomic analysis of Neurospora crassa using five major crop residues and the novel role of the sporulation regulator rca-1 in lignocellulase production The VELVET A orthologue VEL1 of Trichoderma reesei regulates fungal development and is essential for cellulase gene expression Comparative metabolism of cellulose, sophorose and glucose in Trichoderma reesei using high-throughput genomic and proteomic analyses Functional characterization of a xylose transporter in Aspergillus nidulans Crystal structure and biochemical characterization of the recombinant ThBgl, a GH1 β-glucosidase overexpressed in Trichoderma harzianum under biomass degradation conditions.Tracking the best reference genes for RT-qPCR data normalization in filamentous fungi Resistance to Botrytis cinerea in Solanum lycopersicoides involves widespread transcriptional reprogramming.Regulators of plant biomass degradation in ascomycetous fungi.Comparative transcriptome analysis reveals different strategies for degradation of steam-exploded sugarcane bagasse by Aspergillus niger and Trichoderma reesei.The proteome and phosphoproteome of Neurospora crassa in response to cellulose, sucrose and carbon starvation.Deep RNA sequencing reveals a high frequency of alternative splicing events in the fungus Trichoderma longibrachiatum.(Post-)genomics approaches in fungal research.Synergistic effect of Aspergillus niger and Trichoderma reesei enzyme sets on the saccharification of wheat straw and sugarcane bagasse.Genome-wide transcriptomic analysis of a superior biomass-degrading strain of A. fumigatus revealed active lignocellulose-degrading genes L-Methionine repressible promoters for tuneable gene expression in Trichoderma reesei.Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments.Aspergillus nidulans protein kinase A plays an important role in cellulase production.The Genomes of Three Uneven Siblings: Footprints of the Lifestyles of Three Trichoderma Species.Epigenetics as an emerging tool for improvement of fungal strains used in biotechnology.Trichoderma reesei complete genome sequence, repeat-induced point mutation, and partitioning of CAZyme gene clusters Deciphering the molecular mechanisms behind cellulase production in Trichoderma reesei, the hyper-cellulolytic filamentous fungus.Genome wide analysis of protein production load in Trichoderma reesei.RNA-sequencing reveals the complexities of the transcriptional response to lignocellulosic biofuel substrates in Aspergillus niger.Comparative transcriptomic analysis of the heat stress response in the filamentous fungus Metarhizium anisopliae using RNA-Seq.U6 snRNA intron insertion occurred multiple times during fungi evolution.Transcriptomic responses of mixed cultures of ascomycete fungi to lignocellulose using dual RNA-seq reveal inter-species antagonism and limited beneficial effects on CAZyme expression.Trichoderma reesei CRE1-mediated Carbon Catabolite Repression in Re-sponse to Sophorose Through RNA Sequencing Analysis.A truncated form of the Carbon catabolite repressor 1 increases cellulase production in Trichoderma reesei.The role of carbon starvation in the induction of enzymes that degrade plant-derived carbohydrates in Aspergillus niger.Transcriptomic analysis of lignocellulosic biomass degradation by the anaerobic fungal isolate Orpinomyces sp. strain C1A.Cellulase hyper-production by Trichoderma reesei mutant SEU-7 on lactose Characterization of a novel sugar transporter involved in sugarcane bagasse degradation in Trichoderma reesei.Mixed evolutionary origins of endogenous biomass-depolymerizing enzymes in animals.New Genomic Approaches to Enhance Biomass Degradation by the Industrial Fungus

P2860

Q26747109-7A51D071-B380-41E0-AEAD-2BC995885477 Q26765356-53C84AC2-DFAF-4DDE-BC74-2E88BA5D805E Q28596039-6DC8E7CE-EAD2-482F-8A4E-BF357831CA28 Q28598336-F8BA77B5-5C20-406F-BA07-604CCD8AF0F7 Q28649841-39B2AF89-02B0-4849-9746-0C4DE622045A Q28652374-976D413E-81ED-41CB-B552-DDC2086CBE70 Q28658407-B3BA20E3-3FF5-404D-87ED-7C1078574C52 Q28660217-6D47775A-4ACD-4D59-819F-50521B3E2A7C Q30385983-23F12CE9-5B4D-4998-9D16-E32A2E2AF3F0 Q30908177-2CB31F20-D2A8-49CD-8CEC-4405808F5D6D Q33669196-88AE0AF7-4DCC-4B01-A012-23C597130F7B Q33791538-E63194E5-1D02-4E91-9399-5E822D605695 Q33859199-C6491F40-A63D-4646-BA73-03CD7A738FDB Q34587779-27C52FD9-DE03-4ECC-A6C7-2A4D488FDAB1 Q35074007-F55CA8B5-A7C1-4AB2-8EB7-0626889D79EC Q35208999-966E71FD-AA89-4D01-BAB2-0A09D659CA71 Q35223509-F4F7FAEE-CA49-4724-A8E7-5C189FFF4D52 Q35664348-211F13D7-6EFB-4098-ACD1-830EFEDCE048 Q35954785-7D4F0757-E012-4BF7-BE4F-52F21B16108B Q36276249-63C69EF1-4838-4F27-B70C-6D69773FD2AB Q36384008-2C20EBE9-6954-4D69-9CEB-ABB3DC8E21CD Q36631422-B5397187-8BD8-452A-A21A-02B3F8A849FE Q38538725-E8865100-9026-4D19-85E4-95BDBCBB7CD0 Q38660607-BFDBEC38-3ABD-482A-A118-D709AC7BC386 Q38807648-F3BB34B2-5097-4B3A-9FA1-8FA801B16F49 Q38847311-34134B04-9046-4094-801A-8102476A1E4E Q38954496-C9F2A1E8-57C4-4B76-BFF8-7B3CEF76C76B Q39202850-4EF39A91-3F23-4C5C-A003-F704E6DB0CCA Q40090885-D5098AD7-8D6E-4E96-A3E2-8B94B591813E Q41097886-AD0D71BB-7B82-4064-AD45-46BB835AF74F Q41459768-26953131-CE61-4709-B638-8579C2459540 Q41844708-4B58CBC9-B82D-40F6-A0E5-B1D33175A8C1 Q42024823-2A176296-D847-4175-AC86-60E5F1966A78 Q42067421-19CE4470-2D1D-4D15-9076-435A6D2794FC Q42370506-E2DFD93C-6C3F-4F49-9472-EC371DCCAE66 Q54563150-5264B9D2-DC1C-4806-AEC3-73F87A85F457 Q55453843-069AC72E-8405-4124-9D37-2AE2E44C18E7 Q57821669-B62F9983-8525-4CD2-BB3A-4BA73CD3003E

P2860

Genome-wide transcriptional response of Trichoderma reesei to lignocellulose using RNA sequencing and comparison with Aspergillus niger

http://www.wikidata.org/entity/Q28681610

description

2013 nî lūn-bûn

@nan

2013 թուականի Օգոստոսին հրատարակուած գիտական յօդուած

@hyw

2013 թվականի օգոստոսին հրատարակված գիտական հոդված

@hy

2013年の論文

@ja

2013年論文

@yue

2013年論文

@zh-hant

2013年論文

@zh-hk

2013年論文

@zh-mo

2013年論文

@zh-tw

2013年论文

@wuu

name

Genome-wide transcriptional re ...... parison with Aspergillus niger

@ast

Genome-wide transcriptional re ...... parison with Aspergillus niger

@en

Genome-wide transcriptional re ...... parison with Aspergillus niger

@nl

type

label

Genome-wide transcriptional re ...... parison with Aspergillus niger

@ast

Genome-wide transcriptional re ...... parison with Aspergillus niger

@en

Genome-wide transcriptional re ...... parison with Aspergillus niger

@nl

prefLabel

Genome-wide transcriptional re ...... parison with Aspergillus niger

@ast

Genome-wide transcriptional re ...... parison with Aspergillus niger

@en

Genome-wide transcriptional re ...... parison with Aspergillus niger

@nl

P1433

Q28681610-FBA88559-FEF1-4241-AD26-28987CBCBB9A

P1476

Q28681610-86E05B6A-BE5C-4C55-A7B5-CAC7F2587978

P2093

Q28681610-41010D7A-2428-4973-9B78-9942460317A8

Q28681610-D2237863-FAA1-4417-8539-1D132D2AD2E5

Q28681610-D3C5172F-55C5-4657-BB9D-46FFD569AEA8

Q28681610-E061E3B1-9EC9-4569-A89D-25B9187F3B90

P2860

Q28681610-02528112-E126-4853-8173-4C08D9247E60

Q28681610-026025BA-5C7C-476D-97DB-522ABB3F82EA

Q28681610-0BCA61BF-2750-43A9-B36A-D8CBE2264A30

Q28681610-0D7B96AB-9084-4A25-8655-A18A94C0A00A

Q28681610-15CBF950-4B8D-431D-8AA0-5B94DA469521

Q28681610-1A4F82C6-187F-482B-B629-71B469C16279

Q28681610-1FC0CC78-A3F3-452C-80A3-796FBF21D50D

Q28681610-28C5C5E8-E739-4063-A062-12501E75B397

Q28681610-29CE7296-E5DC-4DF3-A49C-CD80352A64CE

Q28681610-336FBD79-0D73-4870-9ED7-7A2BD637E1DB

P2888

Q28681610-6CD30483-C7A9-488E-8BAB-C621A271470B

P304

Q28681610-954DC015-9391-4453-ABC1-2522AC5D05FC

P31

Q28681610-B87EC025-60EA-4ECC-951C-2B5F4B7683EF

P3181

Q28681610-14360DE4-C5E3-4EB2-8CCD-7F5445B7457C

P356

Q28681610-F3532005-B697-404E-977D-44A722225B26

P407

Q28681610-9542EB18-66D1-4510-9E5A-8F7910D04BBE

P433

Q28681610-D1912DC8-7310-41BD-BBCD-150109C98460

P478

Q28681610-0737712E-E0A4-4A40-B5B4-6DCF06234362

P50

Q28681610-56312C78-9709-44D2-BB86-811FFA6C14C0

Q28681610-B92884F7-35B0-4931-B957-625F57A36299

P577

Q28681610-46A74C9F-88E5-45B6-8AB8-C9B75F73EC66

P5875

Q28681610-E4A7FDD6-7CEF-4DC2-A2E8-200EBA3BD024

P6179

Q28681610-48F3A8EC-A162-4EDA-B5FE-766D921C55B3

P698

Q28681610-832C820C-C1CD-4B79-8A22-D6A0D828B507

P921

Q28681610-2CE42CEE-759F-4405-B8AF-E8BCEFEC43D9

Q28681610-3ABF43B6-5075-4A10-AB10-9838E3CD5DDD

P932

Q28681610-510C1195-726C-4190-B5FF-807005B1D981

P3181

P356

1471-2164-14-541

P1433

P1476

Genome-wide transcriptional re ...... parison with Aspergillus niger

@en

P2093

David B Archer

http://www.w3.org/2001/XMLSchema#string

Laure Ries

http://www.w3.org/2001/XMLSchema#string

Martin J Blythe

http://www.w3.org/2001/XMLSchema#string

Sunir Malla

http://www.w3.org/2001/XMLSchema#string

P2860

Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88

Mapping and quantifying mammalian transcriptomes by RNA-Seq

Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

The genome sequence of the rice blast fungus Magnaporthe grisea

Major facilitator superfamily

RNA-Seq: a revolutionary tool for transcriptomics

Ceramidases: regulators of cellular responses mediated by ceramide, sphingosine, and sphingosine-1-phosphate

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

Rhamnogalacturonan acetylesterase elucidates the structure and function of a new family of hydrolases

Stimulation of lignocellulosic biomass hydrolysis by proteins of glycoside hydrolase family 61: structure and function of a large, enigmatic family

P2888

1471-2164-14-541

P304

541

http://www.w3.org/2001/XMLSchema#string

P31

scholarly article

P3181

38044

http://www.w3.org/2001/XMLSchema#string

P356

10.1186/1471-2164-14-541

http://www.w3.org/2001/XMLSchema#string

P407

P433

1

http://www.w3.org/2001/XMLSchema#string

P478

14

http://www.w3.org/2001/XMLSchema#string

P50

Steven T. Pullan

Stéphane Delmas

P577

2013-08-09T00:00:00Z

http://www.w3.org/2001/XMLSchema#dateTime

P5875

256983219

http://www.w3.org/2001/XMLSchema#string

P6179

1021721499

http://www.w3.org/2001/XMLSchema#string

P698

24060058

http://www.w3.org/2001/XMLSchema#string

P921

Aspergillus niger

P932

3750697

http://www.w3.org/2001/XMLSchema#string