Performance, accuracy, and Web server for evolutionary placement of short sequence reads under maximum likelihood - Wikidata - wikimedia - TriplyDB

Performance, accuracy, and Web server for evolutionary placement of short sequence reads under maximum likelihood

Performance, accuracy, and Web server for evolutionary placement of short sequence reads under maximum likelihood

http://www.wikidata.org/entity/Q28740970

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Using HSV-1 genome phylogenetics to track past human migrations Ancient and modern environmental DNA High-throughput biodiversity analysis: Rapid assessment of species richness and ecological interactions of Chrysomelidae (Coleoptera) in the tropics Taxon-rich phylogenomic analyses resolve the eukaryotic tree of life and reveal the power of subsampling by sites Accurate extension of multiple sequence alignments using a phylogeny-aware graph algorithm Bats, Primates, and the Evolutionary Origins and Diversification of Mammalian Gammaherpesviruses Cementing mussels to oysters in the pteriomorphian tree: a phylogenomic approach Osmunda pulchella sp. nov. from the Jurassic of Sweden--reconciling molecular and fossil evidence in the phylogeny of modern royal ferns (Osmundaceae)Phylogenomic resolution of scorpions reveals multilevel discordance with morphological phylogenetic signal Osiris: accessible and reproducible phylogenetic and phylogenomic analyses within the Galaxy workflow management system Pan-African phylogeny of Mus (subgenus Nannomys) reveals one of the most successful mammal radiations in Africa RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies TreeFam v9: a new website, more species and orthology-on-the-fly SAR11 bacteria linked to ocean anoxia and nitrogen loss.Multiple introductions and onward transmission of non-pandemic HIV-1 subtype B strains in North America and Europe.Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2.Edge principal components and squash clustering: using the special structure of phylogenetic placement data for sample comparison.Biogeography of heterotrophic flagellate populations indicates the presence of generalist and specialist taxa in the Arctic Ocean Evaluating topological conflict in centipede phylogeny using transcriptomic data sets.A Bayesian approach to inferring the phylogenetic structure of communities from metagenomic data.Phylogenetically typing bacterial strains from partial SNP genotypes observed from direct sequencing of clinical specimen metagenomic data.Beyond classification: gene-family phylogenies from shotgun metagenomic reads enable accurate community analysis.A general species delimitation method with applications to phylogenetic placements.ROCker: accurate detection and quantification of target genes in short-read metagenomic data sets by modeling sliding-window bitscores Plant Communities Rather than Soil Properties Structure Arbuscular Mycorrhizal Fungal Communities along Primary Succession on a Mine Spoil.Communities of microbial eukaryotes in the mammalian gut within the context of environmental eukaryotic diversity Preferential suppression of Anopheles gambiae host sequences allows detection of the mosquito eukaryotic microbiome.Vertebrate decomposition is accelerated by soil microbes.A format for phylogenetic placements.Bioinformatic challenges for DNA metabarcoding of plants and animals.Understanding microbial community diversity metrics derived from metagenomes: performance evaluation using simulated data sets.Factors that affect large subunit ribosomal DNA amplicon sequencing studies of fungal communities: classification method, primer choice, and error.A comparative evaluation of sequence classification programs.Novel bacterial taxa in the human microbiome Phylogenomic interrogation of arachnida reveals systemic conflicts in phylogenetic signal.Biogeography and ecology of the rare and abundant microbial lineages in deep-sea hydrothermal vents.High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences.Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms.Bacterial communities associated with subsurface geochemical processes in continental serpentinite springs.Phylogenetics and the human microbiome

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P2860

Performance, accuracy, and Web server for evolutionary placement of short sequence reads under maximum likelihood

http://www.wikidata.org/entity/Q28740970

description

2011 nî lūn-bûn

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2011 թուականի Մարտին հրատարակուած գիտական յօդուած

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2011 թվականի մարտին հրատարակված գիտական հոդված

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2011年の論文

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2011年論文

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2011年論文

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Performance, accuracy, and Web ...... reads under maximum likelihood

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Performance, accuracy, and Web ...... reads under maximum likelihood

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Performance, accuracy, and Web ...... reads under maximum likelihood

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Performance, accuracy, and Web ...... reads under maximum likelihood

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Performance, accuracy, and Web ...... reads under maximum likelihood

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Denis Krompass

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Simon A Berger

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phyloXML: XML for evolutionary biology and comparative genomics

Obesity alters gut microbial ecology

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

MAFFT version 5: improvement in accuracy of multiple sequence alignment

MUSCLE: multiple sequence alignment with high accuracy and high throughput

A core gut microbiome in obese and lean twins

MEGAN analysis of metagenomic data

NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP.

Profile hidden Markov models

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