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Meraculous: de novo genome assembly with short paired-end reads

Meraculous: de novo genome assembly with short paired-end reads

http://www.wikidata.org/entity/Q28741309

about

Joint assembly and genetic mapping of the Atlantic horseshoe crab genome reveals ancient whole genome duplication The octopus genome and the evolution of cephalopod neural and morphological novelties Genome evolution in the allotetraploid frog Xenopus laevis.FPSAC: fast phylogenetic scaffolding of ancient contigs.Identification of optimum sequencing depth especially for de novo genome assembly of small genomes using next generation sequencing data.An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations MarpoDB: An Open Registry for Marchantia Polymorpha Genetic Parts.Complete Genome Sequence of Streptomyces sp. Sge12, Which Produces Antibacterial and Fungicidal Activities Assemblathon 1: a competitive assessment of de novo short read assembly methods.Finished bacterial genomes from shotgun sequence data.The genetics of divergence and reproductive isolation between ecotypes of Panicum hallii.Testing the reproducibility of multiple displacement amplification on genomes of clonal endosymbiont populations.A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome.Misassembly detection using paired-end sequence reads and optical mapping data Chromosome-scale shotgun assembly using an in vitro method for long-range linkage in silico Whole Genome Sequencer & Analyzer (iWGS): A Computational Pipeline to Guide the Design and Analysis of de novo Genome Sequencing Studies.Development of a toolbox to dissect host-endosymbiont interactions and protein trafficking in the trypanosomatid Angomonas deanei Positional bias in variant calls against draft reference assemblies.Direct determination of diploid genome sequences.Large-scale parallel genome assembler over cloud computing environment.The adaptive landscape of wildtype and glycosylation-deficient populations of the industrial yeast Pichia pastoris.Strategies for optimizing BioNano and Dovetail explored through a second reference quality assembly for the legume model, Medicago truncatula.The present and future of de novo whole-genome assembly.Implications of evolutionary engineering for growth and recombinant protein production in methanol-based growth media in the yeast Pichia pastoris.Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling OPERA-LG: efficient and exact scaffolding of large, repeat-rich eukaryotic genomes with performance guarantees Assembling allopolyploid genomes: no longer formidable.Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti.Natural selection shaped the rise and fall of passenger pigeon genomic diversity.Multiple introductions, admixture and bridgehead invasion characterize the introduction history of Ambrosia artemisiifolia in Europe and Australia.Rapid cloning of genes in hexaploid wheat using cultivar-specific long-range chromosome assembly.Growing old, yet staying young: The role of telomeres in bats' exceptional longevity.Young inversion with multiple linked QTLs under selection in a hybrid zone.A High-Quality Reference Genome for the Invasive Mosquitofish Gambusia affinis Using a Chicago Library.Modular assembly of transposable element arrays by microsatellite targeting in the guayule and rice genomes.The Current State of Cephalopod Science and Perspectives on the Most Critical Challenges Ahead From Three Early-Career Researchers.Versatile genome assembly evaluation with QUAST-LG.

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Meraculous: de novo genome assembly with short paired-end reads

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2011 nî lūn-bûn

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2011 թուականին հրատարակուած գիտական յօդուած

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2011 թվականին հրատարակված գիտական հոդված

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2011年の論文

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2011年論文

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2011年論文

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2011年論文

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2011年論文

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2011年論文

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2011年论文

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name

Meraculous: de novo genome assembly with short paired-end reads

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Meraculous: de novo genome assembly with short paired-end reads

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Meraculous: de novo genome assembly with short paired-end reads

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type

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Meraculous: de novo genome assembly with short paired-end reads

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Meraculous: de novo genome assembly with short paired-end reads

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Meraculous: de novo genome assembly with short paired-end reads

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Meraculous: de novo genome assembly with short paired-end reads

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Meraculous: de novo genome assembly with short paired-end reads

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Meraculous: de novo genome assembly with short paired-end reads

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Meraculous: de novo genome assembly with short paired-end reads

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Isaac Ho

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Jarrod A Chapman

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Shujun Luo

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Sirisha Sunkara

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P2860

Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis

Complete Khoisan and Bantu genomes from southern Africa.

The sequence and de novo assembly of the giant panda genome

The complete genome of an individual by massively parallel DNA sequencing

Genome sequencing in microfabricated high-density picolitre reactors

An Eulerian path approach to DNA fragment assembly

Accurate whole human genome sequencing using reversible terminator chemistry

De novo assembly of human genomes with massively parallel short read sequencing

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

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scholarly article

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Daniel S. Rokhsar

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