ParameciumDB in 2011: new tools and new data for functional and comparative genomics of the model ciliate Paramecium tetraurelia - Wikidata - wikimedia - TriplyDB

ParameciumDB in 2011: new tools and new data for functional and comparative genomics of the model ciliate Paramecium tetraurelia

ParameciumDB in 2011: new tools and new data for functional and comparative genomics of the model ciliate Paramecium tetraurelia

http://www.wikidata.org/entity/Q28743743

about

The Oxytricha trifallax macronuclear genome: a complex eukaryotic genome with 16,000 tiny chromosomes Novel Insights into the Development and Function of Cilia Using the Advantages of the Paramecium Cell and Its Many Cilia Origin, structure and function of millions of chromosomes present in the macronucleus of unicellular eukaryotic ciliate, Oxytricha trifallax: a model organism for transgenerationally programmed genome rearrangements An evolutionary perspective on the kinome of malaria parasites Local effect of enhancer of zeste-like reveals cooperation of epigenetic and cis-acting determinants for zygotic genome rearrangements The BioMart community portal: an innovative alternative to large, centralized data repositories Two sets of RNAi components are required for heterochromatin formation in trans triggered by truncated transgenes Phytophthora have distinct endogenous small RNA populations that include short interfering and microRNAs Computational framework to support integration of biomolecular and clinical data within a translational approach Multimerization properties of PiggyMac, a domesticated piggyBac transposase involved in programmed genome rearrangements A meiosis-specific Spt5 homolog involved in non-coding transcription.Improved methods and resources for paramecium genomics: transcription units, gene annotation and gene expression.Insights into three whole-genome duplications gleaned from the Paramecium caudatum genome sequence.BioMart: a data federation framework for large collaborative projects.Genome-wide analysis of genetic and epigenetic control of programmed DNA deletion.Ku-mediated coupling of DNA cleavage and repair during programmed genome rearrangements in the ciliate Paramecium tetraurelia.BioMart Central Portal: an open database network for the biological community Identification of two nickel ion-induced genes, NCI16 and PcGST1, in Paramecium caudatum.Differential retention and divergent resolution of duplicate genes following whole-genome duplication Spliced DNA sequences in the Paramecium germline: their properties and evolutionary potential Pdsg1 and Pdsg2, novel proteins involved in developmental genome remodelling in Paramecium TFIIS-Dependent Non-coding Transcription Regulates Developmental Genome Rearrangements.Cis-acting signals modulate the efficiency of programmed DNA elimination in Paramecium tetraurelia.Outer dynein arm light chain 1 is essential for controlling the ciliary response to cyclic AMP in Paramecium tetraurelia.The Paramecium germline genome provides a niche for intragenic parasitic DNA: evolutionary dynamics of internal eliminated sequences.Extraordinary genome stability in the ciliate Paramecium tetraurelia.DNA deletion as a mechanism for developmentally programmed centromere loss.Maintenance and Loss of Duplicated Genes by Dosage Subfunctionalization.Proteomic analysis of the cilia membrane of Paramecium tetraurelia.Genome-wide analysis of the phosphoinositide kinome from two ciliates reveals novel evolutionary links for phosphoinositide kinases in eukaryotic cells Sfr1, a Tetrahymena thermophila Sfi1 Repeat Protein, Modulates the Production of Cortical Row Basal Bodies.Circular Concatemers of Ultra-Short DNA Segments Produce Regulatory RNAs.Calcium regulation in the protozoan model, Paramecium tetraurelia.Population Genomics of Paramecium Species.<mds_ies_db>: a database of ciliate genome rearrangements.Epigenetic regulation of serotype expression antagonizes transcriptome dynamics in Paramecium tetraurelia.Functional study of genes essential for autogamy and nuclear reorganization in Paramecium.The Ciliary Protein IFT57 in the Macronucleus of Paramecium.Genomic characterization of variable surface antigens reveals a telomere position effect as a prerequisite for RNA interference-mediated silencing in Paramecium tetraurelia.Evolution of the Dynein Heavy Chain Family in Ciliates.

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ParameciumDB in 2011: new tools and new data for functional and comparative genomics of the model ciliate Paramecium tetraurelia

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2011 nî lūn-bûn

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2011 թուականի Յունուարին հրատարակուած գիտական յօդուած

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2011 թվականի հունվարին հրատարակված գիտական հոդված

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2011年の論文

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ParameciumDB in 2011: new tool ...... ciliate Paramecium tetraurelia

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ParameciumDB in 2011: new tool ...... ciliate Paramecium tetraurelia

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ParameciumDB in 2011: new tool ...... ciliate Paramecium tetraurelia

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ParameciumDB in 2011: new tool ...... ciliate Paramecium tetraurelia

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ParameciumDB in 2011: new tool ...... ciliate Paramecium tetraurelia

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ParameciumDB in 2011: new tool ...... ciliate Paramecium tetraurelia

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Nucleic Acids Research

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ParameciumDB in 2011: new tool ...... ciliate Paramecium tetraurelia

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Linda Sperling

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Olivier Arnaiz

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Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

The Sequence Ontology: a tool for the unification of genome annotations

BLAST+: architecture and applications

Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia

Integrating phenotype ontologies across multiple species

Bug22p, a conserved centrosomal/ciliary protein also present in higher plants, is required for an effective ciliary stroke in Paramecium.

Inparanoid: a comprehensive database of eukaryotic orthologs

MUSCLE: multiple sequence alignment with high accuracy and high throughput

Fast and accurate short read alignment with Burrows-Wheeler transform

ParameciumDB: a community resource that integrates the Paramecium tetraurelia genome sequence with genetic data

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scholarly article

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2269714

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10.1093/NAR/GKQ918

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Database issue

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39

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2011-01-01T00:00:00Z

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3013783

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