Evolutionary history of mammalian transposons determined by genome-wide defragmentation - Wikidata - wikimedia - TriplyDB

Evolutionary history of mammalian transposons determined by genome-wide defragmentation

Evolutionary history of mammalian transposons determined by genome-wide defragmentation

http://www.wikidata.org/entity/Q28757412

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Foxa1 functions as a pioneer transcription factor at transposable elements to activate Afp during differentiation of embryonic stem cells Trim33 Binds and Silences a Class of Young Endogenous Retroviruses in the Mouse Testis; a Novel Component of the Arms Race between Retrotransposons and the Host Genome 29 mammalian genomes reveal novel exaptations of mobile elements for likely regulatory functions in the human genome A novel web-based TinT application and the chronology of the Primate Alu retroposon activity Large-scale discovery of insertion hotspots and preferential integration sites of human transposed elements The mutational spectrum of non-CpG DNA varies with CpG content Automated paleontology of repetitive DNA with REANNOTATE L1 recombination-associated deletions generate human genomic variation CpG dinucleotides and the mutation rate of non-CpG DNA Inferring the expression variability of human transposable element-derived exons by linear model analysis of deep RNA sequencing data.Analysis of transposon interruptions suggests selection for L1 elements on the X chromosome.Chromosomal inversions between human and chimpanzee lineages caused by retrotransposons Intergenic and repeat transcription in human, chimpanzee and macaque brains measured by RNA-Seq.Calibration of mutation rates reveals diverse subfamily structure of galliform CR1 repeats.EnHERV: Enrichment analysis of specific human endogenous retrovirus patterns and their neighboring genes Ancestral repeats have shaped epigenome and genome composition for millions of years in Arabidopsis thaliana A comprehensive analysis of piRNAs from adult human testis and their relationship with genes and mobile elements.Small RNA profiling and characterization of piRNA clusters in the adult testes of the common marmoset, a model primate.The RIDL hypothesis: transposable elements as functional domains of long noncoding RNAs Tandemly repeated DNA families in the mouse genome.Endogenous retroviruses function as species-specific enhancer elements in the placenta (Meta)genomic insights into the pathogenome of Cellulosimicrobium cellulans.The majority of primate-specific regulatory sequences are derived from transposable elements Interactions of chromatin context, binding site sequence content, and sequence evolution in stress-induced p53 occupancy and transactivation.Whole-genome phylogeny of mammals: evolutionary information in genic and nongenic regions Genome-wide evolutionary and functional analysis of the Equine Repetitive Element 1: an insertion in the myostatin promoter affects gene expression Single genome retrieval of context-dependent variability in mutation rates for human germline Biased distributions and decay of long interspersed nuclear elements in the chicken genome.Active transposition in genomes The primate-specific noncoding RNA HPAT5 regulates pluripotency during human preimplantation development and nuclear reprogramming Evolutionary age of repetitive element subfamilies and sensitivity of DNA methylation to airborne pollutants.Mapping H4K20me3 onto the chromatin landscape of senescent cells indicates a function in control of cell senescence and tumor suppression through preservation of genetic and epigenetic stability.Mammalian non-CG methylations are conserved and cell-type specific and may have been involved in the evolution of transposon elements.Characterization and distribution of retrotransposons and simple sequence repeats in the bovine genome.Internal priming: an opportunistic pathway for L1 and Alu retrotransposition in hominins.Transposable elements in cancer.Similar Evolutionary Trajectories for Retrotransposon Accumulation in Mammals.Inferring transposons activity chronology by TRANScendence - TEs database and de-novo mining tool.The 3D folding of metazoan genomes correlates with the association of similar repetitive elements.Bioinformatics and genomic analysis of transposable elements in eukaryotic genomes.

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Evolutionary history of mammalian transposons determined by genome-wide defragmentation

http://www.wikidata.org/entity/Q28757412

description

2007 nî lūn-bûn

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2007 թուականի Յուլիսին հրատարակուած գիտական յօդուած

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2007 թվականի հուլիսին հրատարակված գիտական հոդված

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2007年の論文

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2007年論文

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2007年論文

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2007年論文

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name

Evolutionary history of mammalian transposons determined by genome-wide defragmentation

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Evolutionary history of mammalian transposons determined by genome-wide defragmentation

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Evolutionary history of mammalian transposons determined by genome-wide defragmentation

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type

label

Evolutionary history of mammalian transposons determined by genome-wide defragmentation

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Evolutionary history of mammalian transposons determined by genome-wide defragmentation

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Evolutionary history of mammalian transposons determined by genome-wide defragmentation

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prefLabel

Evolutionary history of mammalian transposons determined by genome-wide defragmentation

@ast

Evolutionary history of mammalian transposons determined by genome-wide defragmentation

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Evolutionary history of mammalian transposons determined by genome-wide defragmentation

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JOURNAL.PCBI.0030137

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PLOS Computational Biology

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Evolutionary history of mammalian transposons determined by genome-wide defragmentation

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Gary Benson

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György Abrusán

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Joti Giordano

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Peter E Warburton

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Yevgeniy Gelfand

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Yongchao Ge

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Initial sequencing and analysis of the human genome

Genome sequence of the Brown Norway rat yields insights into mammalian evolution

Initial sequencing and comparative analysis of the mouse genome

The modern molecular clock

The evolutionary history of human DNA transposons: evidence for intense activity in the primate lineage

A phylogenomic study of human, dog, and mouse

A large family of ancient repeat elements in the human genome is under strong selection.

A family of conserved noncoding elements derived from an ancient transposable element

Functional noncoding sequences derived from SINEs in the mammalian genome

Tiggers and DNA transposon fossils in the human genome

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