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Obol: integrating language and meaning in bio-ontologies

Obol: integrating language and meaning in bio-ontologies

http://www.wikidata.org/entity/Q28757799

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Relations in biomedical ontologies The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration Ontology Design Patterns for bio-ontologies: a case study on the Cell Cycle Ontology Uberon, an integrative multi-species anatomy ontology An anatomy ontology to represent biological knowledge in Dictyostelium discoideum Integrating phenotype ontologies across multiple species Defining functional distances over gene ontology The Gene Ontology (GO) project in 2006 Gene Ontology synonym generation rules lead to increased performance in biomedical concept recognition.Survey-based naming conventions for use in OBO Foundry ontology development Ontological realism: A methodology for coordinated evolution of scientific ontologies Plant Ontology (PO): a Controlled Vocabulary of Plant Structures and Growth Stages Interoperability between phenotypes in research and healthcare terminologies--Investigating partial mappings between HPO and SNOMED CT Semi-automated ontology generation within OBO-Edit Bio-ontologies: current trends and future directions Accessing and integrating data and knowledge for biomedical research.Quality control for terms and definitions in ontologies and taxonomies.Evaluation of lexical methods for detecting relationships between concepts from multiple ontologies.Enhancing biomedical ontologies through alignment of semantic relationships: exploratory approaches.OBO to OWL: a protege OWL tab to read/save OBO ontologies.GORouter: an RDF model for providing semantic query and inference services for Gene Ontology and its associations.Structuring and extracting knowledge for the support of hypothesis generation in molecular biology.The Neural/Immune Gene Ontology: clipping the Gene Ontology for neurological and immunological systems.Logical development of the cell ontology.Bio-Ontology and text: bridging the modeling gap.The teleost anatomy ontology: anatomical representation for the genomics age Cross-product extensions of the Gene Ontology.Unintended consequences of existential quantifications in biomedical ontologies.OntoCheck: verifying ontology naming conventions and metadata completeness in Protégé 4 Dovetailing biology and chemistry: integrating the Gene Ontology with the ChEBI chemical ontology.On carcinomas and other pathological entities.Ontology quality assurance through analysis of term transformations.Enrichment of OBO ontologies.Automatically transforming pre- to post-composed phenotypes: EQ-lising HPO and MP.GOLink: Finding Cooccurring Terms across Gene Ontology Namespaces Identification of OBO nonalignments and its implications for OBO enrichment.A new synonym-substitution method to enrich the human phenotype ontology.Improving the interoperability of biomedical ontologies with compound alignments.Technologies and Best Practices for Building Bio-Ontologies

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Obol: integrating language and meaning in bio-ontologies

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Obol: integrating language and meaning in bio-ontologies

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Obol: integrating language and meaning in bio-ontologies

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Obol: integrating language and meaning in bio-ontologies

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Comparative and Functional Genomics

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Obol: integrating language and meaning in bio-ontologies

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The Gene Ontology (GO) database and informatics resource

Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation

A methodology to migrate the gene ontology to a description logic environment using DAML+OIL

The ontology of the gene ontology

Phenotypic data in FlyBase.

Nucleotide-based therapies targeting clusterin chemosensitize human lung adenocarcinoma cells both in vitro and in vivo.

The compositional structure of Gene Ontology terms.

Knowledge acquisition, consistency checking and concurrency control for Gene Ontology (GO).

Building mouse phenotype ontologies.

Extension and integration of the gene ontology (GO): combining GO vocabularies with external vocabularies.

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