Putative regulatory sites unraveled by network-embedded thermodynamic analysis of metabolome data
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A consensus yeast metabolic network reconstruction obtained from a community approach to systems biologyConstraint-based analysis of metabolic capacity of Salmonella typhimurium during host-pathogen interactionMetabolic Network Modeling of Microbial Interactions in Natural and Engineered Environmental SystemsComputational approaches for understanding energy metabolismQuantification of Microbial PhenotypesChemical basis of metabolic network organizationA scalable algorithm to explore the Gibbs energy landscape of genome-scale metabolic networksSystem-level insights into yeast metabolism by thermodynamic analysis of elementary flux modesShrinking the metabolic solution space using experimental datasetsComparative evaluation of open source software for mapping between metabolite identifiers in metabolic network reconstructions: application to Recon 2Flux imbalance analysis and the sensitivity of cellular growth to changes in metabolite poolsVariability of metabolite levels is linked to differential metabolic pathways in Arabidopsis's responses to abiotic stressesSimulating metabolism with statistical thermodynamicsIntegrated stoichiometric, thermodynamic and kinetic modelling of steady state metabolismAbsolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coliA genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic informationLimitations in xylose-fermenting Saccharomyces cerevisiae, made evident through comprehensive metabolite profiling and thermodynamic analysisEvaluation of control mechanisms for Saccharomyces cerevisiae central metabolic reactions using metabolome data of eight single-gene deletion mutants.GIM3E: condition-specific models of cellular metabolism developed from metabolomics and expression dataNutritional systems biology modeling: from molecular mechanisms to physiology.anNET: a tool for network-embedded thermodynamic analysis of quantitative metabolome data.Systematic assignment of thermodynamic constraints in metabolic network models.Including metabolite concentrations into flux balance analysis: thermodynamic realizability as a constraint on flux distributions in metabolic networksGenome-scale models of bacterial metabolism: reconstruction and applications.Metabolic network topology reveals transcriptional regulatory signatures of type 2 diabetes.Quantitative assignment of reaction directionality in constraint-based models of metabolism: application to Escherichia coliMetabolic fluxes during strong carbon catabolite repression by malate in Bacillus subtilis.Thermodynamic analysis of biodegradation pathways.IGERS: inferring Gibbs energy changes of biochemical reactions from reaction similaritiesConstraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methodsThermodynamic calculations for biochemical transport and reaction processes in metabolic networksIntegrated pathway modules using time-course metabolic profiles and EST data from Milnesium tardigradumImpact of stoichiometry representation on simulation of genotype-phenotype relationships in metabolic networksAnalysis of omics data with genome-scale models of metabolism.Elimination of thermodynamically infeasible loops in steady-state metabolic modelsMechanistic analysis of multi-omics datasets to generate kinetic parameters for constraint-based metabolic models.Concepts, challenges, and successes in modeling thermodynamics of metabolismThe growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli.A database of thermodynamic properties of the reactions of glycolysis, the tricarboxylic acid cycle, and the pentose phosphate pathway.Bridging the gap between gene expression and metabolic phenotype via kinetic models
P2860
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P2860
Putative regulatory sites unraveled by network-embedded thermodynamic analysis of metabolome data
description
2006 nî lūn-bûn
@nan
2006 թուականին հրատարակուած գիտական յօդուած
@hyw
2006 թվականին հրատարակված գիտական հոդված
@hy
2006年の論文
@ja
2006年論文
@yue
2006年論文
@zh-hant
2006年論文
@zh-hk
2006年論文
@zh-mo
2006年論文
@zh-tw
2006年论文
@wuu
name
Putative regulatory sites unra ...... ic analysis of metabolome data
@ast
Putative regulatory sites unra ...... ic analysis of metabolome data
@en
Putative regulatory sites unra ...... ic analysis of metabolome data
@nl
type
label
Putative regulatory sites unra ...... ic analysis of metabolome data
@ast
Putative regulatory sites unra ...... ic analysis of metabolome data
@en
Putative regulatory sites unra ...... ic analysis of metabolome data
@nl
prefLabel
Putative regulatory sites unra ...... ic analysis of metabolome data
@ast
Putative regulatory sites unra ...... ic analysis of metabolome data
@en
Putative regulatory sites unra ...... ic analysis of metabolome data
@nl
P2860
P3181
P356
P1476
Putative regulatory sites unra ...... ic analysis of metabolome data
@en
P2093
Anne Kümmel
P2860
P304
P3181
P356
10.1038/MSB4100074
P407
P577
2006-01-01T00:00:00Z