Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting - Wikidata - wikimedia - TriplyDB

Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting

Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting

http://www.wikidata.org/entity/Q29037546

about

Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species Microallopatry caused strong diversification in Buthus scorpions (Scorpiones: Buthidae) in the Atlas Mountains (NW Africa)Gene family evolution across 12 Drosophila genomes On the phylogenetic position of Myzostomida: can 77 genes get it wrong?Nuclear versus mitochondrial DNA: evidence for hybridization in colobine monkeys Natural selection in action during speciation Phylogenomic analysis resolves the interordinal relationships and rapid diversification of the laurasiatherian mammals Development and application of a phylogenomic toolkit: resolving the evolutionary history of Madagascar's lemurs Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes Ten genes and two topologies: an exploration of higher relationships in skipper butterflies (Hesperiidae)Species Delimitation and Interspecific Relationships of the Genus Orychophragmus (Brassicaceae) Inferred from Whole Chloroplast Genomes Assessing models of speciation under different biogeographic scenarios; an empirical study using multi-locus and RNA-seq analyses Mitochondrial Genome and Nuclear Markers Provide New Insight into the Evolutionary History of Macaques Mitogenomics of the Old World monkey tribe Papionini Molecular phylogeography and evolutionary history of Poropuntius huangchuchieni (Cyprinidae) in Southwest China Understanding phylogenetic incongruence: lessons from phyllostomid bats Estimating divergence dates and substitution rates in the Drosophila phylogeny Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis Is speciation accompanied by rapid evolution? Insights from comparing reproductive and nonreproductive transcriptomes in Drosophila Incomplete lineage sorting patterns among human, chimpanzee, and orangutan suggest recent orangutan speciation and widespread selection Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes Phylogenomics of primates and their ancestral populations Phylogenomics with incomplete taxon coverage: the limits to inference The Apicomplexan whole-genome phylogeny: an analysis of incongruence among gene trees A new approach to estimate parameters of speciation models with application to apes Inferring phylogenies from RAD sequence data Positive selection differs between protein secondary structure elements in Drosophila Species tree inference by minimizing deep coalescences.Fine-scale phylogenetic discordance across the house mouse genome.Genomics of speciation and introgression in Princess cichlid fishes from Lake Tanganyika.Large-scale turnover of functional transcription factor binding sites in Drosophila.Ancestral inference and the study of codon bias evolution: implications for molecular evolutionary analyses of the Drosophila melanogaster subgroup Rooted triple consensus and anomalous gene trees.Comparison of species tree methods for reconstructing the phylogeny of bearded manakins (Aves: Pipridae, Manacus) from multilocus sequence data.Molecular evolution of synonymous codon usage in Populus Discord between morphological and phylogenetic species boundaries: incomplete lineage sorting and recombination results in fuzzy species boundaries in an asexual fungal pathogen The Rice Paradox: Multiple Origins but Single Domestication in Asian Rice.Chromosome 1 Sequence Analysis of C57BL/6J-Chr1KM Mouse Strain.GIGA: a simple, efficient algorithm for gene tree inference in the genomic age.Transcriptome sequencing and phylogenetic analysis of four species of luminescent beetles.

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Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting

http://www.wikidata.org/entity/Q29037546

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Daniel A. Pollard

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Venky N. Iyer

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P2860

Using GeneWise in the Drosophila annotation experiment

GeneWise and Genomewise

Inferences of species phylogeny in relation to segregation of ancient polymorphisms

Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees.

Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci

Indel-based evolutionary distance and mouse-human divergence

The new animal phylogeny: reliability and implications

Database resources of the National Center for Biotechnology Information

Evolutionary trees from DNA sequences: a maximum likelihood approach

T-Coffee: A novel method for fast and accurate multiple sequence alignment

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