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The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

http://www.wikidata.org/entity/Q29547434

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Diversity and community composition of methanogenic archaea in the rumen of Scottish upland sheep assessed by different methods New rRNA gene-based phylogenies of the Alphaproteobacteria provide perspective on major groups, mitochondrial ancestry and phylogenetic instability A metagenomic approach to characterization of the vaginal microbiome signature in pregnancy Metagenomics of the water column in the pristine upper course of the Amazon river Azospirillum genomes reveal transition of bacteria from aquatic to terrestrial environments Appendiceal spirochaetosis in children Quantitative and phylogenetic study of the Deep Sea Archaeal Group in sediments of the Arctic mid-ocean spreading ridge Yellowstone lake nanoarchaeota Ca. Nitrososphaera and Bradyrhizobium are inversely correlated and related to agricultural practices in long-term field experiments Genome sequence of Candidatus Nitrososphaera evergladensis from group I.1b enriched from Everglades soil reveals novel genomic features of the ammonia-oxidizing archaea Diverse microbiota identified in whole intact nest chambers of the red mason bee Osmia bicornis (Linnaeus 1758)Reduced incidence of Prevotella and other fermenters in intestinal microflora of autistic children Smoking cessation induces profound changes in the composition of the intestinal microbiota in humans Stimulatory effect of xenobiotics on oxidative electron transport of chemolithotrophic nitrifying bacteria used as biosensing element What's new is old: resolving the identity of Leptothrix ochracea using single cell genomics, pyrosequencing and FISH The effects of circumcision on the penis microbiome An insect herbivore microbiome with high plant biomass-degrading capacity Discovery of unique lanthionine synthetases reveals new mechanistic and evolutionary insights A potential source for cellulolytic enzyme discovery and environmental aspects revealed through metagenomics of Brazilian mangroves Metagenomics - a guide from sampling to data analysis The diversity and evolution of cell cycle regulation in alpha-proteobacteria: a comparative genomic analysis Complex sputum microbial composition in patients with pulmonary tuberculosis The complete genome of Burkholderia phenoliruptrix strain BR3459a, a symbiont of Mimosa flocculosa: highlighting the coexistence of symbiotic and pathogenic genes Metagenomic analysis reveals a functional signature for biomass degradation by cecal microbiota in the leaf-eating flying squirrel (Petaurista alborufus lena)Genome characterisation of the genus Francisella reveals insight into similar evolutionary paths in pathogens of mammals and fish Genomic determinants of organohalide-respiration in Geobacter lovleyi, an unusual member of the Geobacteraceae Study of inter- and intra-individual variations in the salivary microbiota Bacillus Strains Most Closely Related to Bacillus nealsonii Are Not Effectively Circumscribed within the Taxonomic Species Definition Insights into dynamics of mobile genetic elements in hyperthermophilic environments from five new Thermococcus plasmids Complete genome sequence of Methanocorpusculum labreanum type strain Z Complete genome sequence of Methanoculleus marisnigri Romesser et al. 1981 type strain JR1 Complete genome sequence of Ferroglobus placidus AEDII12DO Culture-independent characterization of bacteria and fungi in a poultry bioaerosol using pyrosequencing: a new approach Prevalence of Rickettsiales in ticks removed from the skin of outdoor workers in North Carolina phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data Complete Genome sequence of Burkholderia phymatum STM815(T), a broad host range and efficient nitrogen-fixing symbiont of Mimosa species Metagenomic microbial community profiling using unique clade-specific marker genes Genomic analysis identifies association of Fusobacterium with colorectal carcinoma Infernal 1.1: 100-fold faster RNA homology searches Integrative analysis of environmental sequences using MEGAN4

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P2860

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

http://www.wikidata.org/entity/Q29547434

description

2009 nî lūn-bûn

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2009 թուականի Յունուարին հրատարակուած գիտական յօդուած

@hyw

2009 թվականի հունվարին հրատարակված գիտական հոդված

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2009年の論文

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2009年論文

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2009年論文

@zh-hant

2009年論文

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2009年論文

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2009年論文

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2009年论文

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name

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

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The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

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type

label

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

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The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

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prefLabel

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

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The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

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Nucleic Acids Research

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The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

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Cardenas E

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Chai B

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Cole JR

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Farris RJ

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Fish J

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Garrity GM

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Kulam-Syed-Mohideen AS

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Marsh T

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McGarrell DM

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Tiedje JM

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P2860

Query-dependent banding (QDB) for faster RNA similarity searches

Rfam: annotating non-coding RNAs in complete genomes

Acidobacteria phylum sequences in uranium-contaminated subsurface sediments greatly expand the known diversity within the phylum

RNAmmer: consistent and rapid annotation of ribosomal RNA genes

Microbial diversity in the deep sea and the underexplored "rare biosphere"

The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

Chthoniobacter flavus gen. nov., sp. nov., the first pure-culture representative of subdivision two, Spartobacteria classis nov., of the phylum Verrucomicrobia

Self-organizing and self-correcting classifications of biological data.

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D141-5

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scholarly article

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520124

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10.1093/NAR/GKN879

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Database issue

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37

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2009-01-01T00:00:00Z

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19004872

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2686447

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