Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels - Wikidata - wikimedia - TriplyDB

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

http://www.wikidata.org/entity/Q29617522

about

Augmenting transcriptome assembly by combining de novo and genome-guided tools De novo assembly and characterization of the transcriptome of the toxic dinoflagellate Karenia brevis Genome and transcriptome sequencing identifies breeding targets in the orphan crop tef (Eragrostis tef)The genome and transcriptome of the zoonotic hookworm Ancylostoma ceylanicum identify infection-specific gene families The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits Identification and Characterization of Two Novel RNA Viruses from Anopheles gambiae Species Complex Mosquitoes Identifying fusion transcripts using next generation sequencing Next generation sequencing technology and genomewide data analysis: Perspectives for retinal research Metagenomics, Metatranscriptomics, and Metabolomics Approaches for Microbiome Analysis Transcriptome Analysis in Domesticated Species: Challenges and Strategies Analysis of Whole Transcriptome Sequencing Data: Workflow and Software Assembly, Assessment, and Availability of De novo Generated Eukaryotic Transcriptomes Glycosyltransferase family 43 is also found in early eukaryotes and has three subfamilies in Charophycean green algae Inferential considerations for low-count RNA-seq transcripts: a case study on the dominant prairie grass Andropogon gerardii.The genome of tolypocladium inflatum: evolution, organization, and expression of the cyclosporin biosynthetic gene cluster A survey of best practices for RNA-seq data analysis Metavisitor, a Suite of Galaxy Tools for Simple and Rapid Detection and Discovery of Viruses in Deep Sequence Data Comparative genomics of Beauveria bassiana: uncovering signatures of virulence against mosquitoes Pheromone evolution, reproductive genes, and comparative transcriptomics in mediterranean earthworms (annelida, oligochaeta, hormogastridae)Development of transcriptomic resources for interrogating the biosynthesis of monoterpene indole alkaloids in medicinal plant species Molecular changes in Opisthorchis viverrini (Southeast Asian liver fluke) during the transition from the juvenile to the adult stage De novo assembly of mud loach (Misgurnus anguillicaudatus) skin transcriptome to identify putative genes involved in immunity and epidermal mucus secretion RNA-Seq analysis of Cocos nucifera: transcriptome sequencing and de novo assembly for subsequent functional genomics approaches De novo transcriptome assembly from fat body and flight muscles transcripts to identify morph-specific gene expression profiles in Gryllus firmus Transcriptome profiling of khat (Catha edulis) and Ephedra sinica reveals gene candidates potentially involved in amphetamine-type alkaloid biosynthesis Biochemical, transcriptomic and proteomic analyses of digestion in the scorpion Tityus serrulatus: insights into function and evolution of digestion in an ancient arthropod Transcriptome characterization by RNA-Seq reveals the involvement of the complement components in noise-traumatized rat cochleae Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages Unravelling molecular mechanisms from floral initiation to lipid biosynthesis in a promising biofuel tree species, Pongamia pinnata using transcriptome analysis Phylogenomic and biogeographic reconstruction of the Trichinella complex Old cell, new trick? Cnidocytes as a model for the evolution of novelty The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons RNA Sequencing and Analysis Combined de novo and genome guided assembly and annotation of the Pinus patula juvenile shoot transcriptome Evolution of the Antisense Overlap between Genes for Thyroid Hormone Receptor and Rev-erbα and Characterization of an Exonic G-Rich Element That Regulates Splicing of TRα2 mRNA Discovering New Biology through Sequencing of RNA The Discovery, Distribution, and Evolution of Viruses Associated with Drosophila melanogaster Horsetails Are Ancient Polyploids: Evidence from Equisetum giganteum Genomic inference accurately predicts the timing and severity of a recent bottleneck in a nonmodel insect population A transcriptome resource for the koala (Phascolarctos cinereus): insights into koala retrovirus transcription and sequence diversity

P2860

Q21128746-D93F6F90-C410-4E8D-AAE4-2F48BC1FF91E Q21266643-E64AF17A-5735-450E-862E-0D7C3FF3713D Q21266645-6E3B6B2A-34B2-4BCE-ADD6-B61F10313958 Q22122063-6E55C9BD-0E1A-4CBE-84B5-595203D0A195 Q22122076-7FD6443A-8674-4E33-9892-3496398640B1 Q24701803-0097EB50-7AD2-4B12-B0A0-00CA3F696E7F Q26739900-60C761F2-A744-478E-B543-7CEFD541CC87 Q26746206-8333356A-27BD-495E-8E70-8F7889A759A3 Q26747593-F2AC4AE8-CEB2-4AD3-96C1-4BA143D327E8 Q26766287-2435F746-6ED3-4222-AA6F-2A9217E44B46 Q26766664-CD11A173-864E-46BD-9AD4-952DF6052B07 Q26770359-54E2E448-8DCA-4A03-B136-264BF7420CCE Q27305313-FC4B885F-22C0-4CC3-82FC-4EB87551CDDD Q27316733-C23D48AB-D1C3-4BB7-9438-685B891D1485 Q27322887-E068AD60-D559-4111-8B85-1ADB4BADCFE7 Q28071394-294A99F7-653B-4097-BB1D-6ECED68CCC33 Q28114487-3B9CA2DE-05A2-4581-A241-ED5679F345AC Q28119702-2B849F43-2EFE-4872-84B1-4CF34195EF9A Q28289159-63A79569-6E75-43BB-B3A0-15B0A1508EAE Q28484564-35B07B6F-0365-4EFF-9BDA-01DD6DC68BCC Q28485368-68A1892A-BE22-4456-AC46-402F5D423E99 Q28486265-ECEBE151-F825-4867-BEB4-024836D2ECB9 Q28489112-2B90805B-1A5E-4830-8D0B-8AA40114BEC3 Q28538447-ABD03DBB-A1DB-4E96-8DB5-6030253BBAD9 Q28544998-88004A4B-6829-4671-8900-C80DD9A72342 Q28546408-E4212A58-A82A-41BA-BE69-EDC6C546B4B0 Q28582262-A2A7D3BF-69FD-46F5-B7E4-AD862555A3A2 Q28595512-064B8310-27BB-4836-9109-8CFB84687697 Q28598310-36C754C1-BBA4-46A3-8D7E-BB435DC75353 Q28601366-E15A8D8D-7AEC-4338-A9D7-A46180C988D8 Q28601465-8A3F4860-C1CC-4602-9FAA-F855DC77E306 Q28601481-EF152D18-4A50-40A8-B7A7-4B6B1B29145D Q28602964-74EB1D4D-BA64-442B-82EB-9791D64033B8 Q28606454-4D84037D-D54A-4DB6-997C-0732E8D915A6 Q28607693-6BF140F4-9823-431C-953C-F73100EFED04 Q28607787-8F9DE512-E352-4A2C-A073-E96FE05B886B Q28647100-E8D536B7-410D-41E4-8DA1-C5FBA270FE63 Q28647254-39426DD8-8860-4CE6-A48A-48A41B14F02E Q28648046-8D72EECF-5314-4344-A953-7535CC6661BC Q28651052-65BA1C31-2A01-40D4-B643-154529147A78

P2860

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

http://www.wikidata.org/entity/Q29617522

description

2012 nî lūn-bûn

@nan

2012 թուականի Ապրիլին հրատարակուած գիտական յօդուած

@hyw

2012 թվականի ապրիլին հրատարակված գիտական հոդված

@hy

2012年の論文

@ja

2012年論文

@yue

2012年論文

@zh-hant

2012年論文

@zh-hk

2012年論文

@zh-mo

2012年論文

@zh-tw

2012年论文

@wuu

name

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

@ast

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

@en

type

label

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

@ast

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

@en

prefLabel

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

@ast

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

@en

P1433

Q29617522-DC9CC93D-5DF4-4AF4-8E94-690C42383345

P1476

Q29617522-27355A31-B683-400D-AA8B-A8FF67199AC2

P2093

Q29617522-1EEAB0A8-1520-48BF-B62E-B64849F65F33

Q29617522-61A2D7B0-531F-47D2-AA70-A5EC8D7459B0

Q29617522-76C323D8-4CBA-4283-99E0-F0D0EC3043B3

Q29617522-B62ECE13-6BC5-4C70-AB2B-BBDAAF382F2E

P2860

Q29617522-0316C1C3-24BA-4574-8E82-51CE1AE3784F

Q29617522-07438E22-19D4-4D98-A906-B631BEB50599

Q29617522-11390C03-DC6B-4062-9033-8C2DD33643B6

Q29617522-11993D67-7232-490F-A452-02DBDAA1C2E2

Q29617522-1AF5C0AB-A628-4B2C-BE4D-3A343301AF2C

Q29617522-2022C26B-67DF-49F1-9942-EA8202B18790

Q29617522-26889D56-BC54-4BB9-AB4D-97512B91FBA6

Q29617522-26BE409D-A403-4BDC-BBB3-6DB1F6C9C930

Q29617522-2DE55F3B-7C62-48A9-B5B1-6E27281DADB7

Q29617522-2F4FDC55-6534-4B1E-A7D7-D7CBF68D8590

P304

Q29617522-A1C38912-1EF9-4371-862D-F7EBFBF01589

P31

Q29617522-96110B3E-B3BD-4B40-A569-38C86374FCB1

P3181

Q29617522-D951FDF9-61C2-435F-B35B-91CFB8F2F3FC

P356

Q29617522-42B35340-0BBC-452E-8C15-A877013F81CD

P407

Q29617522-0396FF6B-F4D8-4E04-85E3-B22854582195

P433

Q29617522-36E91858-2480-46D7-AAF9-95E2934033EF

P478

Q29617522-6A56BB73-8393-4AB4-BA61-11A2C382AE23

P577

Q29617522-6AFA4BCF-2FD5-4872-A07E-682DC7BC4952

P5875

Q29617522-0D68D2E2-A829-403A-99D1-9FCF7EF772A6

P698

Q29617522-61609929-9E5D-4EBF-A801-89BC7FFD6267

P921

Q29617522-803EF56D-26BE-48F7-8421-FB22CE55E84D

P932

Q29617522-2BD8B92D-EEAF-4F8D-A211-5AF7F5C47B93

P3181

P356

P1433

P1476

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

@en

P2093

Birney E

http://www.w3.org/2001/XMLSchema#string

Schulz MH

http://www.w3.org/2001/XMLSchema#string

Vingron M

http://www.w3.org/2001/XMLSchema#string

Zerbino DR

http://www.w3.org/2001/XMLSchema#string

P2860

ConDeTri--a content dependent read trimmer for Illumina data

Mapping and quantifying mammalian transcriptomes by RNA-Seq

RNA-Seq: a revolutionary tool for transcriptomics

Optimization of de novo transcriptome assembly from next-generation sequencing data

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Annotating genomes with massive-scale RNA sequencing

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

BLAT--the BLAST-like alignment tool

An analysis of the feasibility of short read sequencing

P304

1086-92

http://www.w3.org/2001/XMLSchema#string

P31

scholarly article

P3181

499941

http://www.w3.org/2001/XMLSchema#string

P356

10.1093/BIOINFORMATICS/BTS094

http://www.w3.org/2001/XMLSchema#string

P407

P433

8

http://www.w3.org/2001/XMLSchema#string

P478

28

http://www.w3.org/2001/XMLSchema#string

P577

2012-04-15T00:00:00Z

http://www.w3.org/2001/XMLSchema#dateTime

P5875

221864508

http://www.w3.org/2001/XMLSchema#string

P698

22368243

http://www.w3.org/2001/XMLSchema#string

P921

P932

3324515

http://www.w3.org/2001/XMLSchema#string