Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods. - Wikidata - wikimedia - TriplyDB

Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods.

Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods.

http://www.wikidata.org/entity/Q30051266

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A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure The distributions, mechanisms, and structures of metabolite-binding riboswitches Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction Tensor decomposition reveals concurrent evolutionary convergences and divergences and correlations with structural motifs in ribosomal RNA A benchmark of multiple sequence alignment programs upon structural RNAs.A comprehensive comparison of comparative RNA structure prediction approaches RNAG: a new Gibbs sampler for predicting RNA secondary structure for unaligned sequences RNA sequence analysis using covariance models Turning limited experimental information into 3D models of RNA Neutral evolution of mutational robustness Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints Deciphering RNA structural diversity and systematic phylogeny from microbial metagenomes The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs Predicting the secondary structures and tertiary interactions of 211 group I introns in IE subgroup.Recruitment of intron-encoded and co-opted proteins in splicing of the bI3 group I intron RNA.Measuring covariation in RNA alignments: physical realism improves information measures Secondary structure and patterns of evolution among mammalian mitochondrial 12S rRNA molecules A comparative genomics approach to prediction of new members of regulons Model-Free RNA Sequence and Structure Alignment Informed by SHAPE Probing Reveals a Conserved Alternate Secondary Structure for 16S rRNA Incorporating phylogenetic-based covarying mutations into RNAalifold for RNA consensus structure prediction Structural constraints identified with covariation analysis in ribosomal RNA The limits of nuclear encoded SSU rDNA for resolving the diatom phylogeny Measuring genome evolution 3D RNA and Functional Interactions from Evolutionary Couplings BayesFold: rational 2 degrees folds that combine thermodynamic, covariation, and chemical data for aligned RNA sequences.MARNA: multiple alignment and consensus structure prediction of RNAs based on sequence structure comparisons.RNALogo: a new approach to display structural RNA alignment.Textual data compression in computational biology: a synopsis.Computing highly correlated positions using mutual information and graph theory for G protein-coupled receptors.Database of non-canonical base pairs found in known RNA structures.TRANSAT-- method for detecting the conserved helices of functional RNA structures, including transient, pseudo-knotted and alternative structures Fragmentation of the large subunit ribosomal RNA gene in oyster mitochondrial genomes Genetic and comparative analyses reveal an alternative secondary structure in the region of nt 912 of Escherichia coli 16S rRNA A mutate-and-map strategy accurately infers the base pairs of a 35-nucleotide model RNA Comparative analysis of more than 3000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA.COGNAC: a web server for searching and annotating hydrogen-bonded base interactions in RNA three-dimensional structures.The non-Watson-Crick base pairs and their associated isostericity matrices.ILM: a web server for predicting RNA secondary structures with pseudoknots From structure prediction to genomic screens for novel non-coding RNAs.

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P2860

Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods.

http://www.wikidata.org/entity/Q30051266

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1992 nî lūn-bûn

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1992 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած

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1992 թվականի նոյեմբերին հրատարակված գիտական հոդված

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1992年の論文

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E J Putz

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P2860

Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya

Architecture of ribosomal RNA: constraints on the sequence of "tetra-loops"

STRUCTURE OF A RIBONUCLEIC ACID

Comparative and functional anatomy of group II catalytic introns--a review

Spliceosomal snRNAs

Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis

CUUCGG hairpins: extraordinarily stable RNA secondary structures associated with various biochemical processes.

Evidence for several higher order structural elements in ribosomal RNA.

Higher order structure in ribosomal RNA

Structural features that give rise to the unusual stability of RNA hairpins containing GNRA loops.

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