Sensitivity and selectivity in protein structure comparison.
about
TM-align: a protein structure alignment algorithm based on the TM-scoreMICAN: a protein structure alignment algorithm that can handle Multiple-chains, Inverse alignments, C(α) only models, Alternative alignments, and Non-sequential alignmentsGASH: an improved algorithm for maximizing the number of equivalent residues between two protein structures.Searching protein structure databases with DaliLite v.3MACiE: exploring the diversity of biochemical reactionsQuery-seeded iterative sequence similarity searching improves selectivity 5-20-foldDatabase searching by flexible protein structure alignment.Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures.MMDB and VAST+: tracking structural similarities between macromolecular complexes.Comparative analysis of protein structure alignmentsExploring representations of protein structure for automated remote homology detection and mapping of protein structure spaceComparison study on k-word statistical measures for protein: from sequence to 'sequence space'.Structural alphabets for protein structure classification: a comparison studyFlexible structural protein alignment by a sequence of local transformationsTableau-based protein substructure search using quadratic programming.Improving protein structure similarity searches using domain boundaries based on conserved sequence information.Accuracy analysis of multiple structure alignments.The Catalytic Site Atlas 2.0: cataloging catalytic sites and residues identified in enzymes.The limits of protein sequence comparison?Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assessment.Molecular mapping of functionalities in the solution structure of reduced Grx4, a monothiol glutaredoxin from Escherichia coli.ROC and confusion analysis of structure comparison methods identify the main causes of divergence from manual protein classification.ASH structure alignment package: sensitivity and selectivity in domain classification.Protein homologous cores and loops: important clues to evolutionary relationships between structurally similar proteinsAccuracy of structure-based sequence alignment of automatic methods.Fr-TM-align: a new protein structural alignment method based on fragment alignments and the TM-score.Homologous over-extension: a challenge for iterative similarity searches.Threshold Average Precision (TAP-k): a measure of retrieval designed for bioinformaticsThe significance of the ProtDeform score for structure prediction and alignmentAccelerating pairwise statistical significance estimation for local alignment by harvesting GPU's power.Diversity selection of compounds based on 'protein affinity fingerprints' improves sampling of bioactive chemical space.ENCORE: Software for Quantitative Ensemble Comparison.Structural analysis of hypothetical proteins from Helicobacter pylori: an approach to estimate functions of unknown or hypothetical proteins.Inferring Function from Homology.Correspondences between low-energy modes in enzymes: dynamics-based alignment of enzymatic functional families.ALADYN: a web server for aligning proteins by matching their large-scale motion.A novel approach to structural alignment using realistic structural and environmental information.Pairwise statistical significance of local sequence alignment using multiple parameter sets and empirical justification of parameter set change penalty.Similarity measures for protein ensembles.MISTRAL: a tool for energy-based multiple structural alignment of proteins.
P2860
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P2860
Sensitivity and selectivity in protein structure comparison.
description
2004 nî lūn-bûn
@nan
2004 թուականի Մարտին հրատարակուած գիտական յօդուած
@hyw
2004 թվականի մարտին հրատարակված գիտական հոդված
@hy
2004年の論文
@ja
2004年論文
@yue
2004年論文
@zh-hant
2004年論文
@zh-hk
2004年論文
@zh-mo
2004年論文
@zh-tw
2004年论文
@wuu
name
Sensitivity and selectivity in protein structure comparison.
@ast
Sensitivity and selectivity in protein structure comparison.
@en
type
label
Sensitivity and selectivity in protein structure comparison.
@ast
Sensitivity and selectivity in protein structure comparison.
@en
prefLabel
Sensitivity and selectivity in protein structure comparison.
@ast
Sensitivity and selectivity in protein structure comparison.
@en
P2860
P356
P1433
P1476
Sensitivity and selectivity in protein structure comparison.
@en
P2860
P304
P356
10.1110/PS.03328504
P577
2004-03-01T00:00:00Z