Four-body potentials reveal protein-specific correlations to stability changes caused by hydrophobic core mutations.
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ARID1a-DNA interactions are required for promoter occupancy by SWI/SNFInteratomic potentials and solvation parameters from protein engineering data for buried residuesProtein folding: then and nowCalculation of mutational free energy changes in transition states for protein folding.Ultra-fast evaluation of protein energies directly from sequenceA nonadaptive origin of a beneficial trait: in silico selection for free energy of folding leads to the neutral emergence of mutational robustness in single domain proteins.Effective knowledge-based potentialsAn amino acid packing code for α-helical structure and protein designDesigning specific protein-protein interactions using computation, experimental library screening, or integrated methodsA simple probabilistic model of multibody interactions in proteins.A beta-complex statistical four body contact potential combined with a hydrogen bond statistical potential recognizes the correct native structure from protein decoy sets.Selective prediction of interaction sites in protein structures with THEMATICS.Four distances between pairs of amino acids provide a precise description of their interactionRevisiting the myths of protein interior: studying proteins with mass-fractal hydrophobicity-fractal and polarizability-fractal dimensionsDiscrimination of thermophilic and mesophilic proteins.An Ancestral Tryptophanyl-tRNA Synthetase Precursor Achieves High Catalytic Rate Enhancement without Ordered Ground-State Tertiary Structures.High-Dimensional Mutant and Modular Thermodynamic Cycles, Molecular Switching, and Free Energy Transduction.From isotropic to anisotropic side chain representations: comparison of three models for residue contact estimationStructural alignment of proteins by a novel TOPOFIT method, as a superimposition of common volumes at a topomax point.iStable: off-the-shelf predictor integration for predicting protein stability changesStructure and age jointly influence rates of protein evolution.Enhanced performance in prediction of protein active sites with THEMATICS and support vector machinesDevelopment of quantitative structure-binding affinity relationship models based on novel geometrical chemical descriptors of the protein-ligand interfaces.Evaluation of the relative stability of liganded versus ligand-free protein conformations using Simplicial Neighborhood Analysis of Protein Packing (SNAPP) method.Combining multi-mutant and modular thermodynamic cycles to measure energetic coupling networks in enzyme catalysis.Structural determinants of Neosartorya fischeri antifungal protein (NFAP) for folding, stability and antifungal activity.A master switch couples Mg²⁺-assisted catalysis to domain motion in B. stearothermophilus tryptophanyl-tRNA SynthetaseKnowledge-based entropies improve the identification of native protein structures.A conformational transition state accompanies tryptophan activation by B. stearothermophilus tryptophanyl-tRNA synthetase.HIV-1 protease function and structure studies with the simplicial neighborhood analysis of protein packing method.Scoring function to predict solubility mutagenesisA divide-and-conquer approach to determine the Pareto frontier for optimization of protein engineering experimentsA distance- and orientation-dependent energy function of amino acid key blocks.All-Atom Four-Body Knowledge-Based Statistical Potentials to Distinguish Native Protein Structures from Nonnative Folds.Four-body scoring function for mutagenesis.
P2860
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P2860
Four-body potentials reveal protein-specific correlations to stability changes caused by hydrophobic core mutations.
description
2001 nî lūn-bûn
@nan
2001 թուականի Օգոստոսին հրատարակուած գիտական յօդուած
@hyw
2001 թվականի օգոստոսին հրատարակված գիտական հոդված
@hy
2001年の論文
@ja
2001年論文
@yue
2001年論文
@zh-hant
2001年論文
@zh-hk
2001年論文
@zh-mo
2001年論文
@zh-tw
2001年论文
@wuu
name
Four-body potentials reveal pr ...... by hydrophobic core mutations.
@ast
Four-body potentials reveal pr ...... by hydrophobic core mutations.
@en
type
label
Four-body potentials reveal pr ...... by hydrophobic core mutations.
@ast
Four-body potentials reveal pr ...... by hydrophobic core mutations.
@en
prefLabel
Four-body potentials reveal pr ...... by hydrophobic core mutations.
@ast
Four-body potentials reveal pr ...... by hydrophobic core mutations.
@en
P2093
P356
P1476
Four-body potentials reveal pr ...... by hydrophobic core mutations.
@en
P2093
Carter CW Jr
LeFebvre BC
P304
P356
10.1006/JMBI.2001.4906
P407
P577
2001-08-01T00:00:00Z