First principles predictions of the structure and function of g-protein-coupled receptors: validation for bovine rhodopsin. - Wikidata - wikimedia - TriplyDB

First principles predictions of the structure and function of g-protein-coupled receptors: validation for bovine rhodopsin.

First principles predictions of the structure and function of g-protein-coupled receptors: validation for bovine rhodopsin.

http://www.wikidata.org/entity/Q30340985

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Functional selectivity of dopamine D1 receptor agonists in regulating the fate of internalized receptors Identification of anti-malarial compounds as novel antagonists to chemokine receptor CXCR4 in pancreatic cancer cells Transmembrane protein alignment and fold recognition based on predicted topology Computational prediction of atomic structures of helical membrane proteins aided by EM maps.Hydrophobicity profiles in G protein-coupled receptor transmembrane helical domains.Bihelix: Towards de novo structure prediction of an ensemble of G-protein coupled receptor conformations.An automatic method for predicting transmembrane protein structures using cryo-EM and evolutionary data Prediction of transmembrane helix orientation in polytopic membrane proteins.Preferential binding of allosteric modulators to active and inactive conformational states of metabotropic glutamate receptors.Integrated prediction of one-dimensional structural features and their relationships with conformational flexibility in helical membrane proteins.Ligand supported homology modeling and docking evaluation of CCR2: docked pose selection by consensus scoring.The use of G-protein coupled receptor models in lead optimization.Sanjeevini: a freely accessible web-server for target directed lead molecule discovery Dynamic behavior of fully solvated beta2-adrenergic receptor, embedded in the membrane with bound agonist or antagonist.Computational Biology of Olfactory Receptors.Computational methods in drug design: modeling G protein-coupled receptor monomers, dimers, and oligomers Flat-Bottom Strategy for Improved Accuracy in Protein Side-Chain Placements.Toward high-resolution prediction and design of transmembrane helical protein structures Prediction of the 3-D structure of rat MrgA G protein-coupled receptor and identification of its binding site Towards the development of universal, fast and highly accurate docking/scoring methods: a long way to go.Preferential binding of an odor within olfactory receptors: a precursor to receptor activation Advances in the Development and Application of Computational Methodologies for Structural Modeling of G-Protein Coupled Receptors.Rational design of CCR2 antagonists: a survey of computational studies.An overview of recent developments in GPCR modelling: methods and validation.G-protein coupled receptors: advances in simulation and drug discovery.Critical analysis of the successes and failures of homology models of G protein-coupled receptors.High-resolution NMR spectroscopy of a GPCR in aligned bicelles.Prediction of the 3D structure and dynamics of human DP G-protein coupled receptor bound to an agonist and an antagonist.Test of the Binding Threshold Hypothesis for olfactory receptors: explanation of the differential binding of ketones to the mouse and human orthologs of olfactory receptor 912-93.Predicted structures and dynamics for agonists and antagonists bound to serotonin 5-HT2B and 5-HT2C receptors.Prediction of the three-dimensional structure for the rat urotensin II receptor, and comparison of the antagonist binding sites and binding selectivity between human and rat receptors from atomistic simulations.What can we learn from molecular dynamics simulations for GPCR drug design?Predicted ligands for the human urotensin-II G protein-coupled receptor with some experimental validation.Predictions of CCR1 chemokine receptor structure and BX 471 antagonist binding followed by experimental validation.Overview of drug discovery and development.OMPcontact: An Outer Membrane Protein Inter-Barrel Residue Contact Prediction Method.Structure and Modeling of GPCRs: Implications for Drug Discovery Modeling and Validation of Transmembrane Protein Structures Interaction of transmembrane-spanning segments of the α2-adrenergic receptor with model membranes

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First principles predictions of the structure and function of g-protein-coupled receptors: validation for bovine rhodopsin.

http://www.wikidata.org/entity/Q30340985

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2004 nî lūn-bûn

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2004 թուականի Ապրիլին հրատարակուած գիտական յօդուած

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2004 թվականի ապրիլին հրատարակված գիտական հոդված

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2004年の論文

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First principles predictions o ...... lidation for bovine rhodopsin.

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First principles predictions o ...... lidation for bovine rhodopsin.

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First principles predictions o ...... lidation for bovine rhodopsin.

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Biophysical Journal

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First principles predictions o ...... lidation for bovine rhodopsin.

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Rene J Trabanino

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Spencer E Hall

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Victor W T Kam

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Wely B Floriano

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William A Goddard

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P2860

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms

Basic local alignment search tool

Crystal structure of rhodopsin: A G protein-coupled receptor

All-atom empirical potential for molecular modeling and dynamics studies of proteins

Comparative protein structure modeling of genes and genomes

WHAT IF: a molecular modeling and drug design program

Protein simulations using techniques suitable for very large systems: the cell multipole method for nonbond interactions and the Newton-Euler inverse mass operator method for internal coordinate dynamics

Combinatorial receptor codes for odors

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1904-1921

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Nagarajan Vaidehi

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15041637

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G protein-coupled receptor

Protein function prediction

protein structure prediction

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1304048

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