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CodonO: codon usage bias analysis within and across genomes.

CodonO: codon usage bias analysis within and across genomes.

http://www.wikidata.org/entity/Q30362021

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The Impact of Native State Switching on Protein Sequence Evolution.Analysis of Codon Usage Patterns in Herbaceous Peony (Paeonia lactiflora Pall.) Based on Transcriptome Data Analysis of codon usage patterns in Morus notabilis based on genome and transcriptome data.Why genes evolve faster on secondary chromosomes in bacteria Bacillus anthracis genome organization in light of whole transcriptome sequencing In silico comparative analysis of SSR markers in plants.Molecular evolution of the enzymes involved in the sphingolipid metabolism of Leishmania: selection pressure in relation to functional divergence and conservation.Codon usage bias: causative factors, quantification methods and genome-wide patterns: with emphasis on insect genomes.Predicting protein-ATP binding sites from primary sequence through fusing bi-profile sampling of multi-view features.CBDB: the codon bias database.Comparative genomics reveals adaptation by Alteromonas sp. SN2 to marine tidal-flat conditions: cold tolerance and aromatic hydrocarbon metabolism Comparative analysis of codon usage bias and codon context patterns between dipteran and hymenopteran sequenced genomes.Evolutionary rates and gene dispensability associate with replication timing in the archaeon Sulfolobus islandicus Deconstruction of archaeal genome depict strategic consensus in core pathways coding sequence assembly Using single-nucleotide polymorphisms to discriminate disease-associated from carried genomes of Neisseria meningitidis.Pichia pastoris regulates its gene-specific response to different carbon sources at the transcriptional, rather than the translational, level.A Comprehensive Analysis of Codon Usage Patterns in Blunt Snout Bream (Megalobrama amblycephala) Based on RNA-Seq Data The complete mitochondrial genome sequence of the filarial nematode Wuchereria bancrofti from three geographic isolates provides evidence of complex demographic history.Mutation and selection cause codon usage and bias in mitochondrial genomes of ribbon worms (Nemertea).Mining of microsatellites using next generation sequencing of seabuckthorn (Hippophae rhamnoides L.) transcriptome.Translational selection of genes coding for perfectly conserved proteins among three mosquito vectors.Intrinsic features of Aedes aegypti genes affect transcriptional responsiveness of mosquito genes to dengue virus infection.Coevolution mechanisms that adapt viruses to genetic code variations implemented in their hosts.The Presence of Phage Orthologous Genes in Helicobacter pylori Correlates with the Presence of the Virulence Factors CagA and VacA.Extensive Horizontal Transfer and Homologous Recombination Generate Highly Chimeric Mitochondrial Genomes in Yeast.Phylogeny and synonymous codon usage pattern of Papaya ringspot virus coat protein gene in the sub-Himalayan region of north-east India.Comparative investigation of the various determinants that influence the codon and amino acid usage patterns in the genus Bifidobacterium.Complete genome sequence of lytic bacteriophage RG-2014 that infects the multidrug resistant bacterium Delftia tsuruhatensis ARB-1.Promiscuous plasmid replication in thermophiles: Use of a novel hyperthermophilic replicon for genetic manipulation of Clostridium thermocellum at its optimum growth temperature.Evolutionary History of Copper Membrane Monooxygenases

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CodonO: codon usage bias analysis within and across genomes.

http://www.wikidata.org/entity/Q30362021

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2007 nî lūn-bûn

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2007 թուականի Մայիսին հրատարակուած գիտական յօդուած

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2007 թվականի մայիսին հրատարակված գիտական հոդված

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2007年の論文

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2007年論文

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2007年論文

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2007年論文

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2007年論文

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2007年論文

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2007年论文

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CodonO: codon usage bias analysis within and across genomes.

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CodonO: codon usage bias analysis within and across genomes.

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CodonO: codon usage bias analysis within and across genomes.

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CodonO: codon usage bias analysis within and across genomes.

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CodonO: codon usage bias analysis within and across genomes.

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Guorong Chen

http://www.w3.org/2001/XMLSchema#string

Michael C Angellotti

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Shafquat B Bhuiyan

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Xiu-Feng Wan

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P2860

Codon selection in yeast

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

Synonymous codon usage is subject to selection in thermophilic bacteria.

Quantitative relationship between synonymous codon usage bias and GC composition across unicellular genomes

A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes

JCat: a novel tool to adapt codon usage of a target gene to its potential expression host.

Compositional constraints and genome evolution

The relationship between synonymous codon usage and protein structure in Escherichia coli and Homo sapiens.

Shannon information theoretic computation of synonymous codon usage biases in coding regions of human and mouse genomes

Synonymous codon usage in Bacillus subtilis reflects both translational selection and mutational biases

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10.1093/NAR/GKM392

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Web Server issue

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35

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