Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection. - Wikidata - wikimedia - TriplyDB

Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection.

Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection.

http://www.wikidata.org/entity/Q30469621

about

Lost in Translation (LiT): IUPHAR Review 6 Challenges and Opportunities for T-Cell-Mediated Strategies to Eliminate HIV Reservoirs Group Selection and Contribution of Minority Variants during Virus Adaptation Determines Virus Fitness and Phenotype Bioinformatic analysis of HIV-1 entry and pathogenesis.Evasion of host immune defenses by human papillomavirus Bottlenecks in HIV-1 transmission: insights from the study of founder viruses Viral quasispecies assembly via maximal clique enumeration Deep sequencing of protease inhibitor resistant HIV patient isolates reveals patterns of correlated mutations in Gag and protease Extremely High Mutation Rate of HIV-1 In Vivo Differences in the Selection Bottleneck between Modes of Sexual Transmission Influence the Genetic Composition of the HIV-1 Founder Virus Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data Error baseline rates of five sample preparation methods used to characterize RNA virus populations Viral diversity and clonal evolution from unphased genomic data.An integrated map of HIV genome-wide variation from a population perspective.Subtype-independent near full-length HIV-1 genome sequencing and assembly to be used in large molecular epidemiological studies and clinical management Complete viral RNA genome sequencing of ultra-low copy samples by sequence-independent amplification Universal amplification, next-generation sequencing, and assembly of HIV-1 genomes.Comparison of mapping algorithms used in high-throughput sequencing: application to Ion Torrent data.Nautilus: a bioinformatics package for the analysis of HIV type 1 targeted deep sequencing data.Indel and Carryforward Correction (ICC): a new analysis approach for processing 454 pyrosequencing data Spin models inferred from patient-derived viral sequence data faithfully describe HIV fitness landscapes An evaluation of phylogenetic methods for reconstructing transmitted HIV variants using longitudinal clonal HIV sequence data.Distinguishing low frequency mutations from RT-PCR and sequence errors in viral deep sequencing data.ViVaMBC: estimating viral sequence variation in complex populations from illumina deep-sequencing data using model-based clustering Error correction and statistical analyses for intra-host comparisons of feline immunodeficiency virus diversity from high-throughput sequencing data.Coalescent Inference Using Serially Sampled, High-Throughput Sequencing Data from Intrahost HIV Infection MOSAIK: a hash-based algorithm for accurate next-generation sequencing short-read mapping.Within-Epitope Interactions Can Bias CTL Escape Estimation in Early HIV Infection Sensitive deep-sequencing-based HIV-1 genotyping assay to simultaneously determine susceptibility to protease, reverse transcriptase, integrase, and maturation inhibitors, as well as HIV-1 coreceptor tropism.Accurate viral population assembly from ultra-deep sequencing data.Identification of HCV Resistant Variants against Direct Acting Antivirals in Plasma and Liver of Treatment Naïve Patients Trace amounts of sporadically reappearing HCV RNA can cause infection RAMICS: trainable, high-speed and biologically relevant alignment of high-throughput sequencing reads to coding DNA.Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations.Analysis of HLA A*02 association with vaccine efficacy in the RV144 HIV-1 vaccine trial.Highly sensitive and specific detection of rare variants in mixed viral populations from massively parallel sequence data Recombination-mediated escape from primary CD8+ T cells in acute HIV-1 infection.Early immune adaptation in HIV-1 revealed by population-level approaches.Translating HIV sequences into quantitative fitness landscapes predicts viral vulnerabilities for rational immunogen design.De novo assembly of highly diverse viral populations.

P2860

Q24289150-5D7A99C8-3748-4AA8-9C71-2B294641DF7C Q26781511-63E17FF8-B6B3-485C-AB3C-383220E28AF4 Q27320149-506085A7-19A9-4E59-90FF-990C8F3EAA84 Q27693321-49DBFF3B-89D4-4C34-9C9C-0FDFAB1BD242 Q28076194-C7CBE591-71CC-42BC-9AB1-4D38DDE6AB39 Q28082862-1AE226C3-18B3-4355-B41B-65DCC1716C0A Q28541589-406C9D1A-833F-4336-8B06-79124C52F984 Q28546549-2CE5EB55-F0FB-4F5F-9D81-D8C9BDF93D92 Q28548089-EE4AECFF-FC38-4E97-81C2-4A8AC0E83DEE Q28551914-E303AD15-52E0-4628-A3DF-86D45167F274 Q28727944-E6B7CC0F-A1C3-4643-AA16-3E9CEF745DAD Q29048645-37526123-2F41-444B-8F3D-1576D80BF032 Q30370595-E6176DAC-A34A-4414-BF10-3F17C2DB96A3 Q30373040-B0C3B03D-6F2E-4991-B28A-A29FD5DF3424 Q30376101-79A89021-2606-4FB5-A1A4-91A59CCAC679 Q30421085-F250651F-8DED-4152-AD28-C616A2353E38 Q30421453-0E0E884C-E278-4626-9203-25EC65362CCC Q30580412-F2F1D918-BA99-47CA-AE23-ACD3DBEE0353 Q30652082-04CF4B83-EB27-4D12-BC80-18A3A7913725 Q30658257-9B615E52-3F9C-4E0B-AB12-4C8F64D945FC Q30746334-EBEE448C-48DB-4FFC-AD4E-D885F6BE9EB3 Q30781299-F85A88BE-6355-4EE2-85F9-FECB2FDEA3D4 Q30935585-D859C56A-521D-48DE-A5EC-1119CFBCA94A Q30936152-85009E88-3CF0-4B4D-A0E9-8BA4370AF4DD Q30977532-95BE7ACF-7F09-49A8-ABC0-A54F89537F13 Q31043662-9A8A62AB-43C2-4CDE-8D41-F8CC1D3BBD30 Q31153287-E77F6858-8451-49A1-AEFD-DE57C33B37ED Q33619649-C35E0591-31E4-42D6-BD94-44A56C4FB787 Q33622927-8DD5286A-F506-42DA-9AFD-D0AC0F54A28B Q33760353-9A27FF5A-5A35-4870-A14F-188ADA9E3211 Q33875539-BC6E8637-183F-4B5E-9EDF-E58944E3D6CB Q33944273-81CC1788-9B23-447C-B4B6-55F078B93D2E Q33983478-BC9D5E35-CD8B-4439-BA01-558046CFE14B Q34044256-FC16F328-A2AF-489C-8FE2-34C7F815BB2D Q34057942-D864497A-9685-411F-9CD1-D6672DF4D9B6 Q34205837-36376A4F-5DA6-4775-BE69-E6DC80C554AA Q34269570-30BD85A7-69EF-4A23-9AF2-83318E69BD90 Q34308788-A764B828-9679-49DD-B285-6147F22AFD0B Q34334803-6003FA43-A800-4CF6-AE18-A1537EEA0831 Q34413887-524CA9DE-2A3E-4452-9766-65C5697B7F2E

P2860

Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection.

http://www.wikidata.org/entity/Q30469621

description

2012 nî lūn-bûn

@nan

2012 թուականի Մարտին հրատարակուած գիտական յօդուած

@hyw

2012 թվականի մարտին հրատարակված գիտական հոդված

@hy

2012年の論文

@ja

2012年論文

@yue

2012年論文

@zh-hant

2012年論文

@zh-hk

2012年論文

@zh-mo

2012年論文

@zh-tw

2012年论文

@wuu

name

Whole genome deep sequencing o ...... nition during acute infection.

@ast

Whole genome deep sequencing o ...... nition during acute infection.

@en

type

label

Whole genome deep sequencing o ...... nition during acute infection.

@ast

Whole genome deep sequencing o ...... nition during acute infection.

@en

prefLabel

Whole genome deep sequencing o ...... nition during acute infection.

@ast

Whole genome deep sequencing o ...... nition during acute infection.

@en

P1433

Q30469621-541D3E3D-84AB-47D2-A280-2329EEEE7979

P1476

Q30469621-F6000C81-BD45-4012-B029-5055D2A9D8B0

P2093

Q30469621-02293DCD-13F7-491B-A0A1-07EC960077DC

Q30469621-06B02D93-39E1-4D19-89D5-2189BAAD5442

Q30469621-0AF7BEF3-A08B-487B-9FF0-7B6680B1D361

Q30469621-0D8AE17B-B0D5-42AC-8548-88DF1F240AC9

Q30469621-1697D5C4-9241-4471-868A-2018F3734D94

Q30469621-19818F6C-50B1-4FD2-96C1-535759CD8531

Q30469621-1B5601DB-51AB-4F76-9159-5117B47DEF90

Q30469621-2AD42563-4C83-487A-83FD-98C9CA98E7B2

Q30469621-3414BA7F-D6E6-4FD9-9C5A-749E815CDBE3

Q30469621-3F2960EE-28A0-46ED-AECF-FF1BA1ED6D39

P2860

Q30469621-04E3497E-B6FE-4B78-B131-47FC98357A1D

Q30469621-067FF479-F6CE-4833-B372-B30353ADB786

Q30469621-0B89C43A-F669-40BF-9263-C2EA64FE85B3

Q30469621-0C7B1FA7-C95E-4A2A-B632-47BF97E32022

Q30469621-0F44680B-9370-40FD-92FE-66303A2B5C9E

Q30469621-15C13D7B-F536-4F81-B4FB-3C24A52014C7

Q30469621-1E6B4E28-69F2-4F04-A1B9-01A10061E8AF

Q30469621-22965E2E-91EB-480D-BBD2-CFBE02811C02

Q30469621-250AE505-7217-4A38-A0B4-B523ACA0A776

Q30469621-2F4D3272-F3A1-4EC3-BB09-32072C2510B2

P304

Q30469621-CCAF5661-430D-4E20-A048-B9392C2B43AD

P31

Q30469621-D6561DAC-B3AE-4E41-9C88-D9E8D9F8CD0E

P356

Q30469621-7C4369AC-424C-4FF5-94FC-419EDA13B032

P433

Q30469621-7EEACF71-2BC5-49A4-A1A4-5FCDF9B4881A

P478

Q30469621-B4084134-55E9-4E67-9DB3-7244C06FA988

P50

Q30469621-1BA5CE31-8DB8-41A6-81F3-1F7B892BCFF9

Q30469621-21BCFAC0-9037-491F-BD58-190AEED1D623

Q30469621-5D0CD7CB-5171-490B-9D5F-EC8A1F145D33

Q30469621-66E6C29C-EED1-4AEC-9D74-BC648621EBA8

Q30469621-8006D9DC-52AF-424E-8AE6-8A4DAF1C5C73

Q30469621-82D2A193-3766-4BEF-86ED-B79B119A7791

Q30469621-877FD597-0A72-4BEC-BD24-EE63B04CCA90

Q30469621-87F5E574-9C9C-4ECB-951F-5B94F7413A36

Q30469621-99ADF85C-1BA3-431C-AB40-A6E360DCFD92

Q30469621-A422C9CB-242B-42A2-AD7E-93559B2F6FC4

P577

Q30469621-472E81DA-BA37-43E5-9884-C6782263D1A8

P5875

Q30469621-8B46D359-B001-4B07-BC93-3476C3866CF8

P698

Q30469621-3DFCFDF8-B920-4C84-B3C4-55CE20136C35

P932

Q30469621-C75A4F5D-FC04-4AE7-89C3-CCC34952C095

P356

JOURNAL.PPAT.1002529

P1433

P1476

Whole genome deep sequencing o ...... nition during acute infection.

@en

P2093

Aaron M Berlin

http://www.w3.org/2001/XMLSchema#string

Adrianne D Gladden

http://www.w3.org/2001/XMLSchema#string

Alexander R Macalalad

http://www.w3.org/2001/XMLSchema#string

Allyson K Bloom

http://www.w3.org/2001/XMLSchema#string

Andrew Berical

http://www.w3.org/2001/XMLSchema#string

Bruce W Birren

http://www.w3.org/2001/XMLSchema#string

Carmen Zedlack

http://www.w3.org/2001/XMLSchema#string

Christian L Boutwell

http://www.w3.org/2001/XMLSchema#string

Christine M Malboeuf

http://www.w3.org/2001/XMLSchema#string

Christoph Hess

http://www.w3.org/2001/XMLSchema#string

P2860

Variable fitness impact of HIV-1 escape mutations to cytotoxic T lymphocyte (CTL) response

Genome sequencing in microfabricated high-density picolitre reactors

Selection, transmission, and reversion of an antigen-processing cytotoxic T-lymphocyte escape mutation in human immunodeficiency virus type 1 infection

Positive selection of HIV-1 cytotoxic T lymphocyte escape variants during primary infection

Inefficient cytotoxic T lymphocyte-mediated killing of HIV-1-infected cells in vivo

CD8 Epitope Escape and Reversion in Acute HCV Infection

Quantifying the uncertainty in forecasts of anthropogenic climate change

Antiviral pressure exerted by HIV-1-specific cytotoxic T lymphocytes (CTLs) during primary infection demonstrated by rapid selection of CTL escape virus

Dynamics of HIV-1 quasispecies during antiviral treatment dissected using ultra-deep pyrosequencing

Phylogenetic approach reveals that virus genotype largely determines HIV set-point viral load

P304

e1002529

http://www.w3.org/2001/XMLSchema#string

P31

scholarly article

P356

10.1371/JOURNAL.PPAT.1002529

http://www.w3.org/2001/XMLSchema#string

P433

3

http://www.w3.org/2001/XMLSchema#string

P478

8

http://www.w3.org/2001/XMLSchema#string

P50

Bruce D. Walker

Hendrik Streeck

Chanson J Brumme

Huldrych F Günthard

Christian Brander

Zabrina L Brumme

Florencia Pereyra

P577

2012-03-08T00:00:00Z

http://www.w3.org/2001/XMLSchema#dateTime

P5875

221698136

http://www.w3.org/2001/XMLSchema#string

P698

22412369

http://www.w3.org/2001/XMLSchema#string

P932

3297584

http://www.w3.org/2001/XMLSchema#string