iAlign: a method for the structural comparison of protein-protein interfaces
about
How special is the biochemical function of native proteins?Protein structure alignment beyond spatial proximityOn the role of physics and evolution in dictating protein structure and functionAn Evolution-Based Approach to De Novo Protein Design.InterPred: A pipeline to identify and model protein-protein interactions.Why not consider a spherical protein? Implications of backbone hydrogen bonding for protein structure and functionThe distribution of ligand-binding pockets around protein-protein interfaces suggests a general mechanism for pocket formation.A new size-independent score for pairwise protein structure alignment and its application to structure classification and nucleic-acid binding predictionRestricted N-glycan conformational space in the PDB and its implication in glycan structure modeling.Unleashing the power of meta-threading for evolution/structure-based function inference of proteins.PCalign: a method to quantify physicochemical similarity of protein-protein interfacesAcross-proteome modeling of dimer structures for the bottom-up assembly of protein-protein interaction networks.Structural space of protein-protein interfaces is degenerate, close to complete, and highly connectedNew benchmark metrics for protein-protein docking methods.BioSuper: a web tool for the superimposition of biomolecules and assemblies with rotational symmetry.Predicting the Effect of Mutations on Protein-Protein Binding Interactions through Structure-Based Interface Profiles.Predicted binding site information improves model ranking in protein docking using experimental and computer-generated target structures.MS3ALIGN: an efficient molecular surface aligner using the topology of surface curvaturePBSword: a web server for searching similar protein-protein binding sites.BindProfX: Assessing Mutation-Induced Binding Affinity Change by Protein Interface Profiles with Pseudo-Counts.APoc: large-scale identification of similar protein pockets.Exploiting conformational ensembles in modeling protein-protein interactions on the proteome scale.Low-resolution structural modeling of protein interactome.Finding optimal interaction interface alignments between biological complexes.From face to interface recognition: a differential geometric approach to distinguish DNA from RNA binding surfaces.PPI4DOCK: large scale assessment of the use of homology models in free docking over more than 1000 realistic targets.Improving the performance of the PLB index for ligand-binding site prediction using dihedral angles and the solvent-accessible surface area.G-LoSA: An efficient computational tool for local structure-centric biological studies and drug design.Understanding the role of domain-domain linkers in the spatial orientation of domains in multi-domain proteins.Prediction of protein-protein interaction sites from weakly homologous template structures using meta-threading and machine learning.Oligomerisation status and evolutionary conservation of interfaces of protein structural domain superfamilies.The intricate network between the p34 and p44 subunits is central to the activity of the transcription/DNA repair factor TFIIH.Accurate prediction of interfacial residues in two-domain proteins using evolutionary information: implications for three-dimensional modeling.A Novel Geometry-Based Approach to Infer Protein Interface Similarity.
P2860
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P2860
iAlign: a method for the structural comparison of protein-protein interfaces
description
2010 nî lūn-bûn
@nan
2010 թուականի Յուլիսին հրատարակուած գիտական յօդուած
@hyw
2010 թվականի հուլիսին հրատարակված գիտական հոդված
@hy
2010年の論文
@ja
2010年論文
@yue
2010年論文
@zh-hant
2010年論文
@zh-hk
2010年論文
@zh-mo
2010年論文
@zh-tw
2010年论文
@wuu
name
iAlign: a method for the structural comparison of protein-protein interfaces
@ast
iAlign: a method for the structural comparison of protein-protein interfaces
@en
type
label
iAlign: a method for the structural comparison of protein-protein interfaces
@ast
iAlign: a method for the structural comparison of protein-protein interfaces
@en
prefLabel
iAlign: a method for the structural comparison of protein-protein interfaces
@ast
iAlign: a method for the structural comparison of protein-protein interfaces
@en
P2860
P356
P1433
P1476
iAlign: a method for the structural comparison of protein-protein interfaces
@en
P2093
P2860
P304
P356
10.1093/BIOINFORMATICS/BTQ404
P407
P577
2010-07-11T00:00:00Z