Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot projectEvidence for transcript networks composed of chimeric RNAs in human cellsPseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolutionDefining functional DNA elements in the human genomeThe GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expressionDeep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAsA myelopoiesis-associated regulatory intergenic noncoding RNA transcript within the human HOXA clusterStructured RNAs in the ENCODE selected regions of the human genomeProminent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regionsThe DART classification of unannotated transcription within the ENCODE regions: associating transcription with known and novel lociMicroarray-based DNA methylation profiling: technology and applications.Transcriptional maps of 10 human chromosomes at 5-nucleotide resolutionModeling gene expression using chromatin features in various cellular contextsGenome-wide analysis of estrogen receptor binding sitesSTAR: ultrafast universal RNA-seq alignerHigh density synthetic oligonucleotide arraysTemporal profile of replication of human chromosomesUnderstanding transcriptional regulation by integrative analysis of transcription factor binding data.Detection of deleted genomic DNA using a semiautomated computational analysis of GeneChip data.Differential analysis for high density tiling microarray dataRank-statistics based enrichment-site prediction algorithm developed for chromatin immunoprecipitation on chip experiments.Efficient targeted transcript discovery via array-based normalization of RACE libraries.The reality of pervasive transcription.Synthetic spike-in standards for RNA-seq experiments.Genome-wide mapping indicates that p73 and p63 co-occupy target sites and have similar dna-binding profiles in vivo.Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan.Diversity and dynamics of the Drosophila transcriptomeHigh-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression.A promoter-level mammalian expression atlasTUF love for "junk" DNA.The transcriptional diversity of 25 Drosophila cell lines.Origin of phenotypes: genes and transcripts.Microarrays and genetic epidemiology: a multipurpose tool for a multifaceted field.Comparing genomes within the species Mycobacterium tuberculosis.Flexible use of high-density oligonucleotide arrays for single-nucleotide polymorphism discovery and validation.Temporal gene regulation during HIV-1 infection of human CD4+ T cells.The transcriptional responses of respiratory epithelial cells to Bordetella pertussis reveal host defensive and pathogen counter-defensive strategiesGenome-wide antisense transcription drives mRNA processing in bacteriaThe isolation and characterization of the Escherichia coli DNA adenine methylase (dam) gene.Beyond expression profiling: next generation uses of high density oligonucleotide arrays.
P50
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P50
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hulumtues
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Thomas Gingeras
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Thomas R Gingeras
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Thomas R Gingeras
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Thomas R. Gingeras
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Thomas R. Gingeras
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Thomas Gingeras
@fr
Thomas R Gingeras
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Thomas R Gingeras
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Thomas Gingeras
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Thomas R Gingeras
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Thomas R Gingeras
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Thomas R. Gingeras
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Thomas R. Gingeras
@es
P106
P1153
7003527869
P21
P31
P496
0000-0001-9106-3573