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Hypothesis testing and power calculations for taxonomic-based human microbiome data

Hypothesis testing and power calculations for taxonomic-based human microbiome data

http://www.wikidata.org/entity/Q30584286

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A framework for human microbiome research The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International Consortium inaugural meeting report Tiny microbes, enormous impacts: what matters in gut microbiome studies?Comparative metagenomics reveals taxonomically idiosyncratic yet functionally congruent communities in periodontitis The early infant gut microbiome varies in association with a maternal high-fat diet Optimizing methods and dodging pitfalls in microbiome research Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis.Selection of models for the analysis of risk-factor trees: leveraging biological knowledge to mine large sets of risk factors with application to microbiome data.An integrative Bayesian Dirichlet-multinomial regression model for the analysis of taxonomic abundances in microbiome data.Application of Taxonomic Modeling to Microbiota Data Mining for Detection of Helminth Infection in Global Populations.Normalization and microbial differential abundance strategies depend upon data characteristics.Comparison of the vaginal microbial communities in women with recurrent genital HSV receiving acyclovir intravaginal rings.A general framework for association analysis of microbial communities on a taxonomic tree.Targeted Enrichment for Pathogen Detection and Characterization in Three Felid Species Biogeography of the ecosystems of the healthy human body.Performing Skin Microbiome Research: A Method to the Madness LADES: a software for constructing and analyzing longitudinal designs in biomedical research.An efficient algorithm for accurate computation of the Dirichlet-multinomial log-likelihood function 16S rRNA gene pyrosequencing of reference and clinical samples and investigation of the temperature stability of microbiome profiles.Phylogenetics and the human microbiome Aboriginal birth cohort (ABC): a prospective cohort study of early life determinants of adiposity and associated risk factors among Aboriginal people in Canada.ANOVA-like differential expression (ALDEx) analysis for mixed population RNA-Seq.An evolving perspective about the origins of childhood undernutrition and nutritional interventions that includes the gut microbiome.Sinonasal microbiome sampling: a comparison of techniques Navigating the labyrinth: a guide to sequence-based, community ecology of arbuscular mycorrhizal fungi.Sparse and compositionally robust inference of microbial ecological networks Power and sample-size estimation for microbiome studies using pairwise distances and PERMANOVA A Method for Determining Taxonomical Contributions to Group Differences in Microbiomic Investigations.Analysis of composition of microbiomes: a novel method for studying microbial composition.Neutral Models of Microbiome Evolution.The Influence of the Autoimmunity-Associated Ancestral HLA Haplotype AH8.1 on the Human Gut Microbiota: A Cross-Sectional Study.Oligofructose protects against arsenic-induced liver injury in a model of environment/obesity interaction Impact of probiotic supplements on microbiome diversity following antibiotic treatment of mice.Plant diversity increases spatio-temporal niche complementarity in plant-pollinator interactions A Novel Analysis Method for Paired-Sample Microbial Ecology Experiments.MDSINE: Microbial Dynamical Systems INference Engine for microbiome time-series analyses.Urinary Microbiota Associated with Preterm Birth: Results from the Conditions Affecting Neurocognitive Development and Learning in Early Childhood (CANDLE) Study.Cross-biome comparison of microbial association networks.A phylogenetic transform enhances analysis of compositional microbiota data Dynamic changes of the respiratory microbiota and its relationship to fecal and blood microbiota in healthy young cats

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Hypothesis testing and power calculations for taxonomic-based human microbiome data

http://www.wikidata.org/entity/Q30584286

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2012 nî lūn-bûn

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2012 թուականի Դեկտեմբերին հրատարակուած գիտական յօդուած

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2012 թվականի դեկտեմբերին հրատարակված գիտական հոդված

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2012年の論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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2012年论文

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name

Hypothesis testing and power calculations for taxonomic-based human microbiome data

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Hypothesis testing and power calculations for taxonomic-based human microbiome data

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Hypothesis testing and power calculations for taxonomic-based human microbiome data

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Hypothesis testing and power calculations for taxonomic-based human microbiome data

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Hypothesis testing and power calculations for taxonomic-based human microbiome data

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Hypothesis testing and power calculations for taxonomic-based human microbiome data

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Hypothesis testing and power calculations for taxonomic-based human microbiome data

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David J Edwards

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Edward L Boone

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Elena Deych

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J Paul Brooks

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Patricio S La Rosa

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Qin Wang

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William D Shannon

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P2860

A primer on metagenomics

The NIH Human Microbiome Project

The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis

Dominance and Diversity in Land Plant Communities: Numerical relations of species express the importance of competition in community function and evolution

Dirichlet multinomial mixtures: generative models for microbial metagenomics

UniFrac: a new phylogenetic method for comparing microbial communities.

The human microbiome project

The detection of disease clustering and a generalized regression approach

Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness.

Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples.

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