3D chromosome modeling with semi-definite programming and Hi-C data.
about
4D nucleomes in single cells: what can computational modeling reveal about spatial chromatin conformation?Analysis methods for studying the 3D architecture of the genomeInferential Structure Determination of Chromosomes from Single-Cell Hi-C DataChromosome3D: reconstructing three-dimensional chromosomal structures from Hi-C interaction frequency data using distance geometry simulated annealingRestraint-based three-dimensional modeling of genomes and genomic domains.MOGEN: a tool for reconstructing 3D models of genomes from chromosomal conformation capturing data.Discovering hotspots in functional genomic data superposed on 3D chromatin configuration reconstructions.An integrated 3-Dimensional Genome Modeling Engine for data-driven simulation of spatial genome organization.Statistical challenges in analyzing methylation and long-range chromosomal interaction data3D genome structure modeling by Lorentzian objective function.Distance-based assessment of the localization of functional annotations in 3D genome reconstructions.Chromatin Interaction Analysis with Paired-End Tag (ChIA-PET) sequencing technology and applicationThe Hitchhiker's guide to Hi-C analysis: practical guidelines.Manifold Based Optimization for Single-Cell 3D Genome Reconstruction.Reconstruction of 3D genome architecture via a two-stage algorithm.Chromosome position determines the success of double-strand break repair3D-GNOME: an integrated web service for structural modeling of the 3D genomeChrom3D: three-dimensional genome modeling from Hi-C and nuclear lamin-genome contacts.Automatic analysis and 3D-modelling of Hi-C data using TADbit reveals structural features of the fly chromatin colorsModeling chromosomes: Beyond pretty pictures.How computer science can help in understanding the 3D genome architecture.The three-dimensional genome organization of Drosophila melanogaster through data integration.Three-dimensional reconstruction of single-cell chromosome structure using recurrence plots.Current theoretical models fail to predict the topological complexity of the human genome.Advances in Genomic Profiling and Analysis of 3D Chromatin Structure and Interaction.miniMDS: 3D structural inference from high-resolution Hi-C data.Network analysis identifies chromosome intermingling regions as regulatory hotspots for transcription.Sequence-based multiscale modeling for high-throughput chromosome conformation capture (Hi-C) data analysis.Reconstructing spatial organizations of chromosomes through manifold learning.3D genome reconstruction from chromosomal contacts.Producing genome structure populations with the dynamic and automated PGS software.Improved accuracy assessment for 3D genome reconstructions.High-resolution 3D models of Caulobacter crescentus chromosome reveal genome structural variability and organization.3D modeling of chromatin structure: is there a way to integrate and reconcile single cell and population experimental data?
P2860
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P2860
3D chromosome modeling with semi-definite programming and Hi-C data.
description
2013 nî lūn-bûn
@nan
2013 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած
@hyw
2013 թվականի նոյեմբերին հրատարակված գիտական հոդված
@hy
2013年の論文
@ja
2013年論文
@yue
2013年論文
@zh-hant
2013年論文
@zh-hk
2013年論文
@zh-mo
2013年論文
@zh-tw
2013年论文
@wuu
name
3D chromosome modeling with semi-definite programming and Hi-C data.
@ast
3D chromosome modeling with semi-definite programming and Hi-C data.
@en
type
label
3D chromosome modeling with semi-definite programming and Hi-C data.
@ast
3D chromosome modeling with semi-definite programming and Hi-C data.
@en
prefLabel
3D chromosome modeling with semi-definite programming and Hi-C data.
@ast
3D chromosome modeling with semi-definite programming and Hi-C data.
@en
P356
P1476
3D chromosome modeling with semi-definite programming and Hi-C data.
@en
P2093
Kim-Chuan Toh
Zhizhuo Zhang
P304
P356
10.1089/CMB.2013.0076
P577
2013-11-01T00:00:00Z