BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data. - Wikidata - wikimedia - TriplyDB

BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data.

BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data.

http://www.wikidata.org/entity/Q30691137

about

Profiling genome-wide DNA methylation Base resolution methylome profiling: considerations in platform selection, data preprocessing and analysis MORC1 represses transposable elements in the mouse male germline Epigenome-wide association of liver methylation patterns and complex metabolic traits in mice A comprehensive resource of genomic, epigenomic and transcriptomic sequencing data for the black truffle Tuber melanosporum.AKSmooth: enhancing low-coverage bisulfite sequencing data via kernel-based smoothing.Genome-wide signature of local adaptation linked to variable CpG methylation in oak populations.Investigating bisulfite short-read mapping failure with hairpin bisulfite sequencing data.Evaluation of preprocessing, mapping and postprocessing algorithms for analyzing whole genome bisulfite sequencing data.MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data.An integrative approach for efficient analysis of whole genome bisulfite sequencing data.An epigenetic signature in peripheral blood associated with the haplotype on 17q21.31, a risk factor for neurodegenerative tauopathy.GPU-BSM: a GPU-based tool to map bisulfite-treated reads.Enrichment methods provide a feasible approach to comprehensive and adequately powered investigations of the brain methylome PEAT: an intelligent and efficient paired-end sequencing adapter trimming algorithm.BisQC: an operational pipeline for multiplexed bisulfite sequencing Bison: bisulfite alignment on nodes of a cluster In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse.Pancreatic cancer patient survival correlates with DNA methylation of pancreas development genes.DNA Demethylation Dynamics in the Human Prenatal Germline.Adult porcine genome-wide DNA methylation patterns support pigs as a biomedical model.An Rtf2 Domain-Containing Protein Influences Pre-mRNA Splicing and Is Essential for Embryonic Development in Arabidopsis thaliana.An evaluation of methods to test predefined genomic regions for differential methylation in bisulfite sequencing data.Targeted alignment and end repair elimination increase alignment and methylation measure accuracy for reduced representation bisulfite sequencing data Fast, accurate, and lightweight analysis of BS-treated reads with ERNE 2.A Bayesian Assignment Method for Ambiguous Bisulfite Short Reads Remote Ischemic Conditioning Alters Methylation and Expression of Cell Cycle Genes in Aneurysmal Subarachnoid Hemorrhage.Gene and transposable element methylation in great tit (Parus major) brain and blood.Analysis and Visualization Tool for Targeted Amplicon Bisulfite Sequencing on Ion Torrent Sequencers.Genome-wide analysis of DNA methylation in pigs using reduced representation bisulfite sequencing Impact of neonatal iron deficiency on hippocampal DNA methylation and gene transcription in a porcine biomedical model of cognitive development.TEA: the epigenome platform for Arabidopsis methylome study.Epigenetic changes mediated by polycomb repressive complex 2 and E2a are associated with drug resistance in a mouse model of lymphoma.Simultaneous profiling of transcriptome and DNA methylome from a single cell Systems Nutrigenomics Reveals Brain Gene Networks Linking Metabolic and Brain Disorders.Mammalian non-CG methylations are conserved and cell-type specific and may have been involved in the evolution of transposon elements.Tet2 and Tet3 cooperate with B-lineage transcription factors to regulate DNA modification and chromatin accessibility.Tet proteins influence the balance between neuroectodermal and mesodermal fate choice by inhibiting Wnt signaling.Cumulative Impact of Polychlorinated Biphenyl and Large Chromosomal Duplications on DNA Methylation, Chromatin, and Expression of Autism Candidate Genes.Methodological aspects of whole-genome bisulfite sequencing analysis.

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BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data.

http://www.wikidata.org/entity/Q30691137

description

2013 nî lūn-bûn

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2013 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած

@hyw

2013 թվականի նոյեմբերին հրատարակված գիտական հոդված

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2013年の論文

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2013年論文

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2013年論文

@zh-hant

2013年論文

@zh-hk

2013年論文

@zh-mo

2013年論文

@zh-tw

2013年论文

@wuu

name

BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data.

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BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data.

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type

label

BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data.

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BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data.

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BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data.

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BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data.

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1471-2164-14-774

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BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data.

@en

P2093

Michael Q Zhang

http://www.w3.org/2001/XMLSchema#string

Pao-Yang Chen

http://www.w3.org/2001/XMLSchema#string

Petko Fiziev

http://www.w3.org/2001/XMLSchema#string

Shawn Cokus

http://www.w3.org/2001/XMLSchema#string

Weihong Yan

http://www.w3.org/2001/XMLSchema#string

Xueguang Sun

http://www.w3.org/2001/XMLSchema#string

P2860

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Genome-scale DNA methylation maps of pluripotent and differentiated cells

Human DNA methylomes at base resolution show widespread epigenomic differences

Fast gapped-read alignment with Bowtie 2

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

SOAP: short oligonucleotide alignment program

Galaxy: a platform for interactive large-scale genome analysis.

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

Using quality scores and longer reads improves accuracy of Solexa read mapping.

BSMAP: whole genome bisulfite sequence MAPping program

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14

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Matteo Pellegrini

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2013-11-10T00:00:00Z

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258425386

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24206606

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3840619

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