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Identification and correction of systematic error in high-throughput sequence data

Identification and correction of systematic error in high-throughput sequence data

http://www.wikidata.org/entity/Q31041859

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Genotyping-by-sequencing for Populus population genomics: an assessment of genome sampling patterns and filtering approaches Genome-wide detection of single-nucleotide and copy-number variations of a single human cell Best practices for evaluating single nucleotide variant calling methods for microbial genomics Ultra-fast local-haplotype variant calling using paired-end DNA-sequencing data reveals somatic mosaicism in tumor and normal blood samples Identifying disease mutations in genomic medicine settings: current challenges and how to accelerate progress Guanine holes are prominent targets for mutation in cancer and inherited disease Investigation into the annotation of protocol sequencing steps in the sequence read archive.Special features of RAD Sequencing data: implications for genotyping.Comparison of mapping algorithms used in high-throughput sequencing: application to Ion Torrent data.New insights from existing sequence data: generating breakthroughs without a pipette DRISEE overestimates errors in metagenomic sequencing data.VarBin, a novel method for classifying true and false positive variants in NGS data.Oligotyping: Differentiating between closely related microbial taxa using 16S rRNA gene data.ConPADE: genome assembly ploidy estimation from next-generation sequencing data Detecting non-allelic homologous recombination from high-throughput sequencing data.Distinguishing low frequency mutations from RT-PCR and sequence errors in viral deep sequencing data.Underlying Data for Sequencing the Mitochondrial Genome with the Massively Parallel Sequencing Platform Ion Torrent™ PGM™Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data.An NGS Workflow Blueprint for DNA Sequencing Data and Its Application in Individualized Molecular Oncology.Synthetic spike-in standards improve run-specific systematic error analysis for DNA and RNA sequencing.Analysis of plant microbe interactions in the era of next generation sequencing technologies.MosaicHunter: accurate detection of postzygotic single-nucleotide mosaicism through next-generation sequencing of unpaired, trio, and paired samples.Ultrasensitive and high-efficiency screen of de novo low-frequency mutations by o2n-seq.Patterns of sequencing coverage bias revealed by ultra-deep sequencing of vertebrate mitochondria.A gradient-boosting approach for filtering de novo mutations in parent-offspring trios Feature-based classifiers for somatic mutation detection in tumour-normal paired sequencing data.Transcriptional analysis of endocrine disruption using zebrafish and massively parallel sequencing How to infer reliable diploid genotypes from NGS or traditional sequence data: from basic probability to experimental optimization.A new approach for detecting low-level mutations in next-generation sequence data.The challenges of genome analysis in the health care setting.Genome-wide localization of protein-DNA binding and histone modification by a Bayesian change-point method with ChIP-seq data.High-throughput DNA sequencing errors are reduced by orders of magnitude using circle sequencing Generation of artificial FASTQ files to evaluate the performance of next-generation sequencing pipelines.Denoising DNA deep sequencing data-high-throughput sequencing errors and their correction.SRST2: Rapid genomic surveillance for public health and hospital microbiology labs.Ultra-deep mutant spectrum profiling: improving sequencing accuracy using overlapping read pairs Discovering motifs that induce sequencing errors.Comparing somatic mutation-callers: beyond Venn diagrams.Comparison of custom capture for targeted next-generation DNA sequencing Eleven candidate susceptibility genes for common familial colorectal cancer

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P2860

Identification and correction of systematic error in high-throughput sequence data

http://www.wikidata.org/entity/Q31041859

description

2011 nî lūn-bûn

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2011 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած

@hyw

2011 թվականի նոյեմբերին հրատարակված գիտական հոդված

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2011年の論文

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2011年論文

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2011年論文

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2011年論文

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2011年論文

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2011年論文

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2011年论文

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name

Identification and correction of systematic error in high-throughput sequence data

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Identification and correction of systematic error in high-throughput sequence data

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type

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Identification and correction of systematic error in high-throughput sequence data

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Identification and correction of systematic error in high-throughput sequence data

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prefLabel

Identification and correction of systematic error in high-throughput sequence data

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Identification and correction of systematic error in high-throughput sequence data

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BMC Bioinformatics

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Identification and correction of systematic error in high-throughput sequence data

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Dario Boffelli

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David I K Martin

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Frazer Meacham

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Joseph Dhahbi

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Meromit Singer

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P2860

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

The diploid genome sequence of an Asian individual

Sequence logos: a new way to display consensus sequences

A map of human genome variation from population-scale sequencing

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

WebLogo: A Sequence Logo Generator

The Sequence Alignment/Map format and SAMtools

Genomics: In search of rare human variants

Integrative genomics viewer

Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

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1471-2105-12-451

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