Mascot file parsing and quantification (MFPaQ), a new software to parse, validate, and quantify proteomics data generated by ICAT and SILAC mass spectrometric analyses: application to the proteomics study of membrane proteins from primary human endo

Mascot file parsing and quantification (MFPaQ), a new software to parse, validate, and quantify proteomics data generated by ICAT and SILAC mass spectrometric analyses: application to the proteomics study of membrane proteins from primary human endo

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http://www.wikidata.org/entity/Q31113970

Q31113970

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Proteomics: from single molecules to biological pathways The nucleolar protein Nop19p interacts preferentially with Utp25p and Dhr2p and is essential for the production of the 40S ribosomal subunit in Saccharomyces cerevisiae.Assessment of the red cell proteome of young patients with unexplained hemolytic anemia by two-dimensional differential in-gel electrophoresis (DIGE)SILAC-based proteomic profiling of the human MDA-MB-231 metastatic breast cancer cell line in response to the two antitumoral lactoferrin isoforms: the secreted lactoferrin and the intracellular delta-lactoferrin Promoter-Dependent Translation Controlled by p54nrb and hnRNPM during Myoblast Differentiation Chronic ethanol feeding affects proteasome-interacting proteins Open source libraries and frameworks for mass spectrometry based proteomics: a developer's perspective mzDB: a file format using multiple indexing strategies for the efficient analysis of large LC-MS/MS and SWATH-MS data sets.Extensive analysis of the cytoplasmic proteome of human erythrocytes using the peptide ligand library technology and advanced mass spectrometry.Mechanistic insights into the impact of Cold Atmospheric Pressure Plasma on human epithelial cell lines.In-depth exploration of cerebrospinal fluid by combining peptide ligand library treatment and label-free protein quantification.Manganese regulation of virulence factors and oxidative stress resistance in Neisseria gonorrhoeae.Mitochondrial proteomic approach reveals galectin-7 as a novel BCL-2 binding protein in human cells.Deciphering preferential interactions within supramolecular protein complexes: the proteasome case.Microgravity induces changes in microsome-associated proteins of Arabidopsis seedlings grown on board the international space station.Accessing to the minor proteome of red blood cells through the influence of the nanoparticle surface properties on the corona composition.Proteolipidic composition of exosomes changes during reticulocyte maturation SILACtor: software to enable dynamic SILAC studies.Label-free quantification and shotgun analysis of complex proteomes by one-dimensional SDS-PAGE/NanoLC-MS: evaluation for the large scale analysis of inflammatory human endothelial cells Substrates of the ASB2α E3 ubiquitin ligase in dendritic cells.Spiked proteomic standard dataset for testing label-free quantitative software and statistical methods.Identification of the hypoxia-inducible factor 2α nuclear interactome in melanoma cells reveals master proteins involved in melanoma development Bacterial protein-O-mannosylating enzyme is crucial for virulence of Mycobacterium tuberculosis.Proteomic analysis reveals selective impediment of neuronal remodeling upon Borna disease virus infection.Affinity purification strategy to capture human endogenous proteasome complexes diversity and to identify proteasome-interacting proteins.MaXIC-Q Web: a fully automated web service using statistical and computational methods for protein quantitation based on stable isotope labeling and LC-MS.Quantitative proteomics reveals a dynamic association of proteins to detergent-resistant membranes upon elicitor signaling in tobacco.Venous and arterial endothelial proteomics: mining for markers and mechanisms of endothelial diversity.Proteomics of extremophiles.A critical appraisal of techniques, software packages, and standards for quantitative proteomic analysis.Control of RUNX-induced repression of Notch signaling by MLF and its partner DnaJ-1 during Drosophila hematopoiesis.Computational Methods in Mass Spectrometry-Based Proteomics.Quantitative proteomic analysis to decipher the differential apoptotic response of bortezomib-treated APL cells before and after retinoic acid differentiation reveals involvement of protein toxicity mechanisms.Exosomes account for vesicle-mediated transcellular transport of activatable phospholipases and prostaglandins.A label-free quantitative proteomics strategy to identify E3 ubiquitin ligase substrates targeted to proteasome degradation.Find pairs: the module for protein quantification of the PeakQuant software suite.Proteomics analysis of Medicago truncatula response to infection by the phytopathogenic bacterium Ralstonia solanacearum points to jasmonate and salicylate defence pathways.MassChroQ: a versatile tool for mass spectrometry quantification.Identification of two putative acyltransferase genes potentially implicated in dithiolopyrrolone biosyntheses in Saccharothrix algeriensis NRRL B-24137.Label-free quantitative proteomic analysis of human plasma-derived microvesicles to find protein signatures of abdominal aortic aneurysms.

P2860

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P2860

Mascot file parsing and quantification (MFPaQ), a new software to parse, validate, and quantify proteomics data generated by ICAT and SILAC mass spectrometric analyses: application to the proteomics study of membrane proteins from primary human endo

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http://www.wikidata.org/entity/Q31113970

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2007 nî lūn-bûn

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2007 թուականի Մայիսին հրատարակուած գիտական յօդուած

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2007 թվականի մայիսին հրատարակված գիտական հոդված

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2007年の論文

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2007年学术文章

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2007年学术文章

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2007年学术文章

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2007年学术文章

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