SiDCoN: a tool to aid scoring of DNA copy number changes in SNP chip data
about
High quality copy number and genotype data from FFPE samples using Molecular Inversion Probe (MIP) microarraysA genome-wide study of cytogenetic changes in colorectal cancer using SNP microarrays: opportunities for future personalized treatmentQuantification of normal cell fraction and copy number neutral LOH in clinical lung cancer samples using SNP array dataDeciphering clonality in aneuploid breast tumors using SNP array and sequencing data.MixHMM: inferring copy number variation and allelic imbalance using SNP arrays and tumor samples mixed with stromal cellsGenome Alteration Print (GAP): a tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays.BACOM: in silico detection of genomic deletion types and correction of normal cell contamination in copy number data.Single nucleotide polymorphism-based genome-wide chromosome copy change, loss of heterozygosity, and aneuploidy in Barrett's esophagus neoplastic progression.qpure: A tool to estimate tumor cellularity from genome-wide single-nucleotide polymorphism profilesEstimation of the fraction of cancer cells in a tumor DNA sample using DNA methylationGPHMM: an integrated hidden Markov model for identification of copy number alteration and loss of heterozygosity in complex tumor samples using whole genome SNP arraysMicrosatellite stable colorectal cancers stratified by the BRAF V600E mutation show distinct patterns of chromosomal instability.TAFFYS: An Integrated Tool for Comprehensive Analysis of Genomic Aberrations in Tumor Samples.Segmentation-based detection of allelic imbalance and loss-of-heterozygosity in cancer cells using whole genome SNP arrays.Genome-wide identification of somatic aberrations from paired normal-tumor samples.Identification of TFG (TRK-fused gene) as a putative metastatic melanoma tumor suppressor gene.Polyploidy in myelofibrosis: analysis by cytogenetic and SNP array indicates association with advancing diseaseGenome-wide analysis of esophageal adenocarcinoma yields specific copy number aberrations that correlate with prognosis.Primer extension based quantitative polymerase chain reaction reveals consistent differences in the methylation status of the MGMT promoter in diffusely infiltrating gliomas (WHO grade II-IV) of adults.
P2860
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P2860
SiDCoN: a tool to aid scoring of DNA copy number changes in SNP chip data
description
2007 nî lūn-bûn
@nan
2007 թուականի Հոկտեմբերին հրատարակուած գիտական յօդուած
@hyw
2007 թվականի հոտեմբերին հրատարակված գիտական հոդված
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2007年の論文
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2007年学术文章
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2007年学术文章
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2007年学术文章
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2007年学术文章
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2007年学术文章
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2007年學術文章
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name
SiDCoN: a tool to aid scoring of DNA copy number changes in SNP chip data
@ast
SiDCoN: a tool to aid scoring of DNA copy number changes in SNP chip data
@en
type
label
SiDCoN: a tool to aid scoring of DNA copy number changes in SNP chip data
@ast
SiDCoN: a tool to aid scoring of DNA copy number changes in SNP chip data
@en
prefLabel
SiDCoN: a tool to aid scoring of DNA copy number changes in SNP chip data
@ast
SiDCoN: a tool to aid scoring of DNA copy number changes in SNP chip data
@en
P2093
P2860
P1433
P1476
SiDCoN: a tool to aid scoring of DNA copy number changes in SNP chip data
@en
P2093
Derek J Nancarrow
Herlina Y Handoko
Nicholas K Hayward
P2860
P356
10.1371/JOURNAL.PONE.0001093
P407
P577
2007-10-31T00:00:00Z