Integration of small-angle X-ray scattering data into structural modeling of proteins and their assemblies - Wikidata - wikimedia - TriplyDB

Integration of small-angle X-ray scattering data into structural modeling of proteins and their assemblies

Integration of small-angle X-ray scattering data into structural modeling of proteins and their assemblies

http://www.wikidata.org/entity/Q31171093

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Dynamic Viral Glycoprotein Machines: Approaches for Probing Transient States That Drive Membrane Fusion Integrative Modeling of Macromolecular Assemblies from Low to Near-Atomic Resolution Reconstruction of SAXS Profiles from Protein Structures Computational modeling of membrane proteins Structures of the autoproteolytic domain from theSaccharomyces cerevisiaenuclear pore complex component, Nup145 Structure of the C-terminal domain of Saccharomyces cerevisiae Nup133, a component of the nuclear pore complex Atomic structure of the nuclear pore complex targeting domain of a nup116 homologue from the yeast, Candida glabrata Conformational transitions upon ligand binding: holo-structure prediction from apo conformations Developing advanced X-ray scattering methods combined with crystallography and computation Substrate-specific reorganization of the conformational ensemble of CSK implicates novel modes of kinase function Proteins at work: a combined small angle X-RAY scattering and theoretical determination of the multiple structures involved on the protein kinase functional landscape ALMOST: an all atom molecular simulation toolkit for protein structure determination.Contact-assisted protein structure modeling by global optimization in CASP11.Blind testing of cross-linking/mass spectrometry hybrid methods in CASP11.Sampling Enrichment toward Target Structures Using Hybrid Molecular Dynamics-Monte Carlo Simulations.Calculation of accurate small angle X-ray scattering curves from coarse-grained protein models Automated minimization of steric clashes in protein structures Accurate flexible fitting of high-resolution protein structures to small-angle x-ray scattering data using a coarse-grained model with implicit hydration shell.Improving protein template recognition by using small-angle x-ray scattering profiles.Atomic-resolution structural information from scattering experiments on macromolecules in solution.A hierarchical algorithm for fast Debye summation with applications to small angle scattering UCSF Chimera, MODELLER, and IMP: an integrated modeling system.Average conformations determined from PRE data provide high-resolution maps of transient tertiary interactions in disordered proteins.Recovering a representative conformational ensemble from underdetermined macromolecular structural data.Structural characterization of a flexible two-domain protein in solution using small angle X-ray scattering and NMR data.Ku and DNA-dependent protein kinase dynamic conformations and assembly regulate DNA binding and the initial non-homologous end joining complex.Integrative structure modeling of macromolecular assemblies from proteomics data Determining Complex Structures using Docking Method with Single Particle Scattering Data Bridging the solution divide: comprehensive structural analyses of dynamic RNA, DNA, and protein assemblies by small-angle X-ray scattering.FoXS: a web server for rapid computation and fitting of SAXS profiles Characterization of protein flexibility using small-angle x-ray scattering and amplified collective motion simulations Multidomain assembled states of Hck tyrosine kinase in solution.Low-resolution molecular models reveal the oligomeric state of the PPAR and the conformational organization of its domains in solution.Integrative structural modeling with small angle X-ray scattering profiles.SAXS ensemble refinement of ESCRT-III CHMP3 conformational transitions Macromolecular docking restrained by a small angle X-ray scattering profile.SoftWAXS: a computational tool for modeling wide-angle X-ray solution scattering from biomolecules.Characterization of proteins with wide-angle X-ray solution scattering (WAXS)On the usefulness of ion-mobility mass spectrometry and SAXS data in scoring docking decoys.Methods for SAXS-based structure determination of biomolecular complexes.

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P2860

Integration of small-angle X-ray scattering data into structural modeling of proteins and their assemblies

http://www.wikidata.org/entity/Q31171093

description

2008 nî lūn-bûn

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2008 թվականի հուլիսին հրատարակված գիտական հոդված

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2008年論文

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Journal of Molecular Biology

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David A Agard

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Friedrich Förster

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Hiro Tsuruta

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Kristin A Krukenberg

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P2860

Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing

Determination of domain structure of proteins from X-ray solution scattering

Global rigid body modeling of macromolecular complexes against small-angle scattering data

Hexameric structures of the archaeal secretion ATPase GspE and implications for a universal secretion mechanism

All-atom empirical potential for molecular modeling and dynamics studies of proteins

Comparative protein structure modeling of genes and genomes

Comparative protein modelling by satisfaction of spatial restraints

Crystallographic R factor refinement by molecular dynamics

Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations

CAPRI: a Critical Assessment of PRedicted Interactions

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