Competitive Na(+) and Rb(+) binding in the minor groove of DNA.
about
Biomolecular electrostatics and solvation: a computational perspectiveCrystallization and characterization of the thallium form of the Oxytricha nova G-quadruplexZn2+ selectively stabilizes FdU-substituted DNA through a unique major groove binding motif.On the molecular basis of uracil recognition in DNA: comparative study of T-A versus U-A structure, dynamics and open base pair kinetics.Ion distributions around left- and right-handed DNA and RNA duplexes: a comparative study.Analyzing ion distributions around DNA: sequence-dependence of potassium ion distributions from microsecond molecular dynamics.DNA exit ramps are revealed in the binding landscapes obtained from simulations in helical coordinates.Flanking A·T basepairs destabilize the B(∗) conformation of DNA A-tracts.Monovalent cation binding by curved DNA molecules containing variable numbers of a-tracts.What drives proteins into the major or minor grooves of DNA?Quantitative analysis of monovalent counterion binding to random-sequence, double-stranded DNA using the replacement ion method.DNA A-tracts are not curved in solutions containing high concentrations of monovalent cations.Effect of the matrix on DNA electrophoretic mobility.Monovalent cation binding in the minor groove of DNA A-tracts.The unique structure of A-tracts and intrinsic DNA bending.Identification of catalytic metal ion ligands in ribozymes.Na+ shows a markedly higher potential than K+ in DNA compaction in a crowded environment.DNA terminal base pairs have weaker hydrogen bonds especially for AT under low salt concentration.Balancing the interactions of ions, water, and DNA in the Drude polarizable force field.Does Cation Size Affect Occupancy and Electrostatic Screening of the Nucleic Acid Ion Atmosphere?Competition among Li(+), Na(+), K(+), and Rb(+) monovalent ions for DNA in molecular dynamics simulations using the additive CHARMM36 and Drude polarizable force fields.Assessing the performance of implicit solvation models at a nucleic acid surface.Mixed-salt effects on the conformation of a short salt-bridge-forming α helix: a simulation study.Differential Deformability of the DNA Minor Groove and Altered BI/BII Backbone Conformational Equilibrium by the Monovalent Ions Li(+), Na(+), K(+), and Rb(+) via Water-Mediated Hydrogen Bonding.Insight into nucleic acid counterion interactions from inside molecular dynamics simulations is “worth its salt”
P2860
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P2860
Competitive Na(+) and Rb(+) binding in the minor groove of DNA.
description
2004 nî lūn-bûn
@nan
2004 թուականի Յունիսին հրատարակուած գիտական յօդուած
@hyw
2004 թվականի հունիսին հրատարակված գիտական հոդված
@hy
2004年の論文
@ja
2004年論文
@yue
2004年論文
@zh-hant
2004年論文
@zh-hk
2004年論文
@zh-mo
2004年論文
@zh-tw
2004年论文
@wuu
name
Competitive Na(+) and Rb(+) binding in the minor groove of DNA.
@ast
Competitive Na(+) and Rb(+) binding in the minor groove of DNA.
@en
type
label
Competitive Na(+) and Rb(+) binding in the minor groove of DNA.
@ast
Competitive Na(+) and Rb(+) binding in the minor groove of DNA.
@en
prefLabel
Competitive Na(+) and Rb(+) binding in the minor groove of DNA.
@ast
Competitive Na(+) and Rb(+) binding in the minor groove of DNA.
@en
P356
P1476
Competitive Na(+) and Rb(+) binding in the minor groove of DNA
@en
P2093
Vladimir P Denisov
P304
P356
10.1021/JA049930Z
P407
P577
2004-06-01T00:00:00Z