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Fungal community analysis by large-scale sequencing of environmental samples

Fungal community analysis by large-scale sequencing of environmental samples

http://www.wikidata.org/entity/Q33223029

about

What's for dinner? Undescribed species of porcini in a commercial packet A new representative of star-shaped fungi: Astraeus sirindhorniae sp. nov. from Thailand Cloning of ribosomal ITS PCR products creates frequent, non-random chimeric sequences – a test involving heterozygotes between Gymnopus dichrous taxa I and II Comparison of DNA extraction methodologies used for assessing fungal diversity via ITS sequencing Genomics and metagenomics technologies to recover ribosomal DNA and single-copy genes from old fruit-body and ectomycorrhiza specimens Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi Scaling up discovery of hidden diversity in fungi: impacts of barcoding approaches Optimizing Outcomes in Immunocompromised Hosts: Understanding the Role of Immunotherapy in Invasive Fungal Diseases Copper at the Fungal Pathogen-Host Axis Utilizing novel diversity estimators to quantify multiple dimensions of microbial biodiversity across domains Changes in Fungal Community Composition in Response to Elevated Atmospheric CO2 and Nitrogen Fertilization Varies with Soil Horizon Fungal traits that drive ecosystem dynamics on land Soil fungal communities in a Castanea sativa (chestnut) forest producing large quantities of Boletus edulis sensu lato (porcini): where is the mycelium of porcini?Analysis of fungal flora in indoor dust by ribosomal DNA sequence analysis, quantitative PCR, and culture Eosinophils in fungus-associated allergic pulmonary disease Validation and application of a PCR primer set to quantify fungal communities in the soil environment by real-time quantitative PCR.Fungal diversity is not determined by mineral and chemical differences in serpentine substrates Nitrogen and carbon reallocation in fungal mycelia during decomposition of boreal forest litter Soil bacterial community response to differences in agricultural management along with seasonal changes in a Mediterranean region.Associations between Ectomycorrhizal Fungi and Bacterial Needle Endophytes in Pinus radiata: Implications for Biotic Selection of Microbial Communities Metacommunity analysis of amoeboid protists in grassland soils The spectrum of fungi that infects humans Temperate pine barrens and tropical rain forests are both rich in undescribed fungi Proteomics shows new faces for the old penicillin producer Penicillium chrysogenum Wood staining fungi revealed taxonomic novelties in Pezizomycotina: New order Superstratomycetales and new species Cyanodermella oleoligni Superimposed Pristine Limestone Aquifers with Marked Hydrochemical Differences Exhibit Distinct Fungal Communities Diversity measures in environmental sequences are highly dependent on alignment quality--data from ITS and new LSU primers targeting basidiomycetes Functional Characterization of Endophytic Fungal Community Associated with Oryza sativa L. and Zea mays L.The online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota).Clustering of fungal community internal transcribed spacer sequence data obscures taxonomic diversity.Elevated atmospheric CO2 stimulates soil fungal diversity through increased fine root production in a semiarid shrubland ecosystem.Large-scale fungal diversity assessment in the Andean Yungas forests reveals strong community turnover among forest types along an altitudinal gradient.Long-term experimental warming alters community composition of ascomycetes in Alaskan moist and dry arctic tundra.Solving the ecological puzzle of mycorrhizal associations using data from annotated collections and environmental samples - an example of saddle fungi.Long-term warming alters richness and composition of taxonomic and functional groups of arctic fungi.Vertical and seasonal dynamics of fungal communities in boreal Scots pine forest soil.Seasonal dynamics of fungal communities in a temperate oak forest soil.Fungal DNA barcoding.Fungal community structure in disease suppressive soils assessed by 28S LSU gene sequencing.Swimming pools and fungi: an environmental epidemiology survey in Italian indoor swimming facilities.

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Fungal community analysis by large-scale sequencing of environmental samples

http://www.wikidata.org/entity/Q33223029

description

2005 nî lūn-bûn

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2005 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած

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2005 թվականի սեպտեմբերին հրատարակված գիտական հոդված

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2005年の論文

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2005年論文

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2005年論文

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2005年論文

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2005年論文

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2005年論文

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2005年论文

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Fungal community analysis by large-scale sequencing of environmental samples

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Fungal community analysis by large-scale sequencing of environmental samples

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Fungal community analysis by large-scale sequencing of environmental samples

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Fungal community analysis by large-scale sequencing of environmental samples

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AEM.71.9.5544-5550.2005

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Applied and Environmental Microbiology

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Fungal community analysis by large-scale sequencing of environmental samples

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Heath E O'Brien

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Jason A Jackson

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Jean-Marc Moncalvo

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Jeri Lynn Parrent

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P2860

Environmental Diversity of Bacteria and Archaea

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

The Bioperl toolkit: Perl modules for the life sciences

EMBOSS: the European Molecular Biology Open Software Suite

A general method applicable to the search for similarities in the amino acid sequence of two proteins

Phylogenetic origins of the asexual mycorrhizal symbiont Cenococcum geophilum Fr. and other mycorrhizal fungi among the ascomycetes

ITS primers with enhanced specificity for basidiomycetes--application to the identification of mycorrhizae and rusts

Analysis of internal transcribed spacer (ITS) regions of rRNA genes in fungal communities in a southeastern U.S. salt marsh.

Diversity of fungi in organic soils under a moorland--Scots pine (Pinus sylvestris L.) gradient.

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5544-5550

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10.1128/AEM.71.9.5544-5550.2005

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9

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71

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Rytas J. Vilgalys

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16151147

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