Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments.
about
Transcription factors bind thousands of active and inactive regions in the Drosophila blastodermConfirming the phylogeny of mammals by use of large comparative sequence data setsBigFoot: Bayesian alignment and phylogenetic footprinting with MCMCPervasive divergence of transcriptional gene regulation in Caenorhabditis nematodesMeasuring the distance between multiple sequence alignments.Comparative validation of the D. melanogaster modENCODE transcriptome annotation.MORPH: probabilistic alignment combined with hidden Markov models of cis-regulatory modules.Statistical tests for natural selection on regulatory regions based on the strength of transcription factor binding sites.Large-scale turnover of functional transcription factor binding sites in Drosophila.Whole-genome cartography of estrogen receptor alpha binding sites.Blueprint for a high-performance biomaterial: full-length spider dragline silk genesBioinformatic identification of novel putative photoreceptor specific cis-elements.How accurately is ncRNA aligned within whole-genome multiple alignments?Alignment and prediction of cis-regulatory modules based on a probabilistic model of evolution.Towards realistic benchmarks for multiple alignments of non-coding sequences.Modeling the evolution of regulatory elements by simultaneous detection and alignment with phylogenetic pair HMMs.Genome-wide identification of conserved regulatory function in diverged sequencesIs transcription factor binding site turnover a sufficient explanation for cis-regulatory sequence divergence?REDfly 2.0: an integrated database of cis-regulatory modules and transcription factor binding sites in Drosophila.Drosophila biology in the genomic age.Divergence between the Drosophila pseudoobscura and D. persimilis genome sequences in relation to chromosomal inversions.Phylogenetic simulation of promoter evolution: estimation and modeling of binding site turnover events and assessment of their impact on alignment tools.Pattern recognition and probabilistic measures in alignment-free sequence analysis.Identification of Lineage-Specific Cis-Regulatory Modules Associated with Variation in Transcription Factor Binding and Chromatin Activity Using Ornstein-Uhlenbeck ModelsEvolution of the mammalian transcription factor binding repertoire via transposable elements.Motif composition, conservation and condition-specificity of single and alternative transcription start sites in the Drosophila genome.Stochastic models of sequence evolution including insertion-deletion events.Population genetics of cis-regulatory sequences that operate during embryonic development in the sea urchin Strongylocentrotus purpuratus.
P2860
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P2860
Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments.
description
2006 nî lūn-bûn
@nan
2006 թուականի Օգոստոսին հրատարակուած գիտական յօդուած
@hyw
2006 թվականի օգոստոսին հրատարակված գիտական հոդված
@hy
2006年の論文
@ja
2006年論文
@yue
2006年論文
@zh-hant
2006年論文
@zh-hk
2006年論文
@zh-mo
2006年論文
@zh-tw
2006年论文
@wuu
name
Detecting the limits of regula ...... rwise and multiple alignments.
@ast
Detecting the limits of regula ...... rwise and multiple alignments.
@en
type
label
Detecting the limits of regula ...... rwise and multiple alignments.
@ast
Detecting the limits of regula ...... rwise and multiple alignments.
@en
prefLabel
Detecting the limits of regula ...... rwise and multiple alignments.
@ast
Detecting the limits of regula ...... rwise and multiple alignments.
@en
P2093
P2860
P356
P1433
P1476
Detecting the limits of regula ...... rwise and multiple alignments.
@en
P2093
Alan M Moses
Daniel A Pollard
Venky N Iyer
P2860
P2888
P356
10.1186/1471-2105-7-376
P577
2006-08-14T00:00:00Z
P5875
P6179
1003517935